Name: Arenimonas malthae CC-JY-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17446

Type strain:

Species: Arenimonas malthae

Strain Designation: CC-JY-1, CC-JY-1T

Culture col. no.: DSM 21305, CCUG 53596, CIP 109310, CCUG 53283

Strain history: CIP <- 2006, P. Kämpfer, J. Liebig Univ., Giessen, Germany: strain CC-JY-1T

NCBI tax ID(s): 354197 (species)

SI-ID 323242

CCUG 53596, CIP 109310, DSM 21305

Section

Arenimonas malthae CC-JY-1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil contaminated with diesel-oil.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Arenimonas*
	Species	**Arenimonas malthae**
	Full Scientific Name (LPSN)	Arenimonas malthae Young et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32108]	Gram stain	negative
[Ref.: #120769]	Gram stain	negative

[Ref.: #32108]	Cell shape	rod-shaped
[Ref.: #120769]	Cell shape	rod-shaped

[Ref.: #32108]	Motility	yes
[Ref.: #120769]	Motility	yes

[Ref.: #59940]

Incubation period

1 day

[Ref.: #32108]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15430]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)

[Ref.: #15430]

Culture medium growth

[Ref.: #15430]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15430]

Culture medium composition

expand / minimize

[Ref.: #33289]

Culture medium

MEDIUM 328- for nutrient agar

[Ref.: #33289]

Culture medium growth

[Ref.: #33289]

Culture medium composition

expand / minimize

[Ref.: #120769]

Culture medium

CIP Medium 328

[Ref.: #120769]

Culture medium growth

[Ref.: #120769]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15430]	growth	28 °C
[Ref.: #32108]	growth	15-36 °C
[Ref.: #32108]	optimum	30 °C
[Ref.: #33289]	growth	30 °C
[Ref.: #59940]	growth	30-37 °C

[Ref.: #15430]	Temperature range	mesophilic
[Ref.: #32108]	Temperature range	mesophilic
[Ref.: #33289]	Temperature range	mesophilic
[Ref.: #59940]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32108]	Oxygen tolerance	aerobe
[Ref.: #59940]	Oxygen tolerance	aerobe
[Ref.: #120769]	Oxygen tolerance	obligate aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32108]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #32108]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #32108]	alanine ChEBI	+	carbon source
[Ref.: #32108]	asparagine ChEBI	+	carbon source
[Ref.: #32108]	aspartate ChEBI	+	carbon source
[Ref.: #120769]	citrate ChEBI	+	carbon source
[Ref.: #32108]	glutamate ChEBI	+	carbon source
[Ref.: #32108]	glycogen ChEBI	+	carbon source
[Ref.: #32108]	L-alaninamide ChEBI	+	carbon source
[Ref.: #32108]	leucine ChEBI	+	carbon source
[Ref.: #32108]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #32108]	nitrate ChEBI	+	reduction
[Ref.: #120769]	nitrate ChEBI	-	reduction
[Ref.: #120769]	nitrite ChEBI	+	reduction
[Ref.: #32108]	phenylalanine ChEBI	+	carbon source
[Ref.: #32108]	proline ChEBI	+	carbon source
[Ref.: #32108]	propionate ChEBI	+	carbon source
[Ref.: #32108]	pyruvate ChEBI	+	carbon source
[Ref.: #32108]	serine ChEBI	+	carbon source
[Ref.: #120769]	sodium thiosulfate ChEBI	-	builds gas from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #120769]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #120769]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #32108]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120769]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #32108]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120769]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32108]	catalase	+	1.11.1.6
[Ref.: #120769]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #32108]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120769]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120769]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120769]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120769]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #120769]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120769]	11781	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15430]	Sample type/isolated from	soil contaminated with diesel-oil
[Ref.: #15430]	Geographic location (country and/or sea, region)	Chyai county
[Ref.: #15430]	Country	Taiwan
[Ref.: #15430]	Country ISO 3 Code	TWN
[Ref.: #15430]	Continent	Asia

[Ref.: #59940]	Sample type/isolated from	Soil,oil contamination
[Ref.: #59940]	Geographic location (country and/or sea, region)	Chyai County
[Ref.: #59940]	Country	Taiwan
[Ref.: #59940]	Country ISO 3 Code	TWN
[Ref.: #59940]	Continent	Asia

[Ref.: #120769]	Sample type/isolated from	Environment, Soil
[Ref.: #120769]	Country	Taiwan
[Ref.: #120769]	Country ISO 3 Code	TWN
[Ref.: #120769]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ239766 (>99% sequence identity) for Arenimonas malthae from Microbeatlas

Aquatic Samples	61
Soil Samples	88
Animal Samples	14
Plant Samples	7
Total Samples	170

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15430]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120769]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15430]	Arenimonas malthae strain CC-JY-1 16S ribosomal RNA gene, partial sequence	DQ239766	1488	ENA	354197 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Arenimonas malthae CC-JY-1	GCA_000747075	contig	GenBank	1384054 tax ID	*
[Ref.: #66792]	Arenimonas malthae CC-JY-1	1384054.3	wgs	PATRIC	1384054 tax ID	*
[Ref.: #66792]	Arenimonas malthae CC-JY-1	2627854023	draft	JGI IMG/M	1384054 tax ID	*

[Ref.: #32108]

GC-content

70.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Arenimonas malthae CC-JY-1 PATRIC: 1384054.3
[Ref.: #69480]	motile	no	86.961	no
[Ref.: #69480]	gram-positive	no	98.172	yes
[Ref.: #69480]	anaerobic	no	98.924	yes
[Ref.: #69480]	halophile	no	92.8	no
[Ref.: #69480]	spore-forming	no	97.822	no
[Ref.: #69480]	glucose-util	yes	70.53	no
[Ref.: #69480]	thermophile	no	98.664	no
[Ref.: #69480]	aerobic	yes	92.294	yes
[Ref.: #69480]	flagellated	no	93.74	no
[Ref.: #69480]	glucose-ferment	no	90.718	no

Availability in culture collections External links

[Ref.: #15430]

Culture collection no.

DSM 21305, CCUG 53596, CIP 109310, CCUG 53283

[Ref.: #86442]

SI-ID 323242

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arenimonas terrae sp. nov., isolated from orchard soil.	Han DM, Chun BH, Kim HM, Khan SA, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.003785	2020	*
Phylogeny	Arenimonas taoyuanensis sp. nov., a novel bacterium isolated from rice-field soil in China.	Zhang SY, Xiao W, Xia YS, Wang YX, Cui XL, Zhang NM	Antonie Van Leeuwenhoek	10.1007/s10482-015-0409-3	2015	*
Phylogeny	Arenimonas aquatica [corrected] sp. nov., a member of the gammaproteobacterium, isolated from a freshwater reservoir.	Kim AR, Lee S, Han K, Ahn TY	J Microbiol	10.1007/s12275-012-1301-8	2012	*
Phylogeny	Arenimonas daechungensis sp. nov., isolated from the sediment of a eutrophic reservoir.	Huy H, Jin L, Lee YK, Lee KC, Lee JS, Yoon JH, Ahn CY, Oh HM	Int J Syst Evol Microbiol	10.1099/ijs.0.035410-0	2012	*
Phylogeny	Arenimonas malthae sp. nov., a gammaproteobacterium isolated from an oil-contaminated site.	Young CC, Kampfer P, Ho MJ, Busse HJ, Huber BE, Arun AB, Shen FT, Lai WA, Rekha PD	Int J Syst Evol Microbiol	10.1099/ijs.0.64975-0	2007	*

References

#15430

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21305

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32108

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28353 (see below)

#33289 ; Curators of the CIP;
#59940 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53596

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86442

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID323242.1 )

#120769 Collection of Institut Pasteur ; Curators of the CIP; CIP 109310

#28353

IJSEM 2790 2007 ( DOI 10.1099/ijs.0.64975-0 , PubMed 18048725 )

* These data were automatically processed and therefore are not curated

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