Photobacterium rosenbergii (DSM 19138, CAIM 911, CBMAI 622)

Name: Photobacterium rosenbergii (DSM 19138, CAIM 911, CBMAI 622)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17231

Type strain

Culture col. no. DSM 19138 CAIM 911 CBMAI 622 LMG 22223

NCBI tax ID(s) 294936

Special Collections DSMZ

History DSMZ <- CAIM <- F. L. Thompson, CBMAI Sao Paulo; CC1

Links

Photobacterium rosenbergii DSM 19138 is an animal pathogen that was isolated from tissue extract from bleached Pachyseris speciosa.

animal pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 129638

CAIM 911,LMG 22223,CBMAI 622,DSM 19138,CECT 7644

@ref 20215

Last LPSN update 2026-05-29 08:28:58

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Photobacterium

Species Photobacterium rosenbergii

Full scientific name Photobacterium rosenbergii Thompson et al. 2005

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.5
125439	negative	98.317

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7835	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7835	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	91.535

Spore formation

@ref	Spore formation	Confidence
125439		99.902

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Cnidaria (Corals)
#Host Body-Site	-	-

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
7835	tissue extract from bleached Pachyseris speciosa	Pachyseris speciosa	Magnetic Island	Australia	AUS	Australia and Oceania

Taxonmaps

69479

Global distribution of 16S sequence AJ842344 (>99% sequence identity) for Photobacterium rosenbergii subclade from Microbeatlas

Aquatic Samples	943
Soil Samples	29
Animal Samples	66
Plant Samples	2
Total Samples	1040

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
7835		1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM302645v1 assembly for Photobacterium rosenbergii DSM 19138	contig	GCA_003026455	294936.4	2858392212	294936	60.98

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7835	Photobacterium eurosenbergii partial 16S rRNA gene, strain LMG 22223T	AJ842344	1505		294936

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM302645v1 assembly for Photobacterium rosenbergii DSM 19138
BV-BRC: 294936.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.54	no
125439	motility	BacteriaNetⓘ	yes	78.13	no
125439	gram_stain	BacteriaNetⓘ	negative	98.32	no
125439	spore_formation	BacteriaNetⓘ	no	99.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Photobacterium rosenbergii strain DSM 19138
PATRIC: 294936.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	92.67	no
125438	spore-forming	spore-formingⓘ	no	83.99	no
125438	aerobic	aerobicⓘ	no	52.08	no
125438	thermophilic	thermophileⓘ	no	99.50	yes
125438	flagellated	motile2+ⓘ	yes	85.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Whole genome sequencing of a novel carrageenan-degrading bacterium Photobacterium rosenbergii and oligosaccharide preparation.	Chen J, Chen R, Cheong KL, Wang Z, Li R, Jia X, Zhao Q, Liu X, Song B, Zhong S.	Front Microbiol	10.3389/fmicb.2025.1519074	2025
Enzymology	High Diversity of beta-Glucosidase-Producing Bacteria and Their Genes Associated with Scleractinian Corals.	Su H, Xiao Z, Yu K, Zhang Q, Lu C, Wang G, Wang Y, Liang J, Huang W, Huang X, Wei F.	Int J Mol Sci	10.3390/ijms22073523	2021
Phylogeny	Photobacterium atrarenae sp. nov. a novel bacterium isolated from sea sand.	Kim BC, Poo H, Kim MN, Lee KH, Lee J, Rhee MS, Shin KS	Curr Microbiol	10.1007/s00284-011-9994-1	2011
Phylogeny	Photobacterium gaetbulicola sp. nov., a lipolytic bacterium isolated from a tidal flat sediment.	Kim YO, Kim KK, Park S, Kang SJ, Lee JH, Lee SJ, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.016923-0	2009
Phylogeny	Photobacterium halotolerans sp. nov., isolated from Lake Martel in Spain.	Rivas R, Garcia-Fraile P, Mateos PF, Martinez-Molina E, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijs.0.64099-0	2006
Phylogeny	Photobacterium rosenbergii sp. nov. and Enterovibrio coralii sp. nov., vibrios associated with coral bleaching.	Thompson FL, Thompson CC, Naser S, Hoste B, Vandemeulebroecke K, Munn C, Bourne D, Swings J	Int J Syst Evol Microbiol	10.1099/ijs.0.63370-0	2005

References

#7835	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19138
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Photobacterium rosenbergii (DSM 19138, CAIM 911, CBMAI 622)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003026455

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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