Name: Photobacterium rosenbergii DSM 19138
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17231

Type strain:

Species: Photobacterium rosenbergii

Culture col. no.: DSM 19138, CAIM 911, CBMAI 622, LMG 22223

Strain history: <- CAIM <- F. L. Thompson, CBMAI Sao Paulo; CC1

NCBI tax ID(s): 294936 (species)

SI-ID 129638

LMG 22223, CBMAI 622, DSM 19138, CECT 7644

Section

Photobacterium rosenbergii DSM 19138 is a mesophilic, motile animal pathogen that was isolated from tissue extract from bleached Pachyseris speciosa.

motile
animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Photobacterium*
	Species	**Photobacterium rosenbergii**
	Full Scientific Name (LPSN)	Photobacterium rosenbergii Thompson et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.973

[Ref.: #69480]	Motility	yes Confidence in %95.341

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7835]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7835]

Culture medium growth

[Ref.: #7835]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7835]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7835]			growth	28 °C

[Ref.: #7835]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.762

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7835]	Sample type/isolated from	tissue extract from bleached Pachyseris speciosa
[Ref.: #7835]	Host species	Pachyseris speciosa
[Ref.: #7835]	Geographic location (country and/or sea, region)	Magnetic Island
[Ref.: #7835]	Country	Australia
[Ref.: #7835]	Country ISO 3 Code	AUS
[Ref.: #7835]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Cnidaria (Corals)
#Host Body-Site	-	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ842344 (>99% sequence identity) for Photobacterium rosenbergii subclade from Microbeatlas

Aquatic Samples	943
Soil Samples	29
Animal Samples	66
Plant Samples	2
Total Samples	1040

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7835]	Pathogenicity (animal)	yes
[Ref.: #7835]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7835]	Photobacterium eurosenbergii partial 16S rRNA gene, strain LMG 22223T	AJ842344	1505	ENA	294936 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Photobacterium rosenbergii DSM 19138	GCA_003026455	contig	GenBank	294936 tax ID	*
[Ref.: #66792]	Photobacterium rosenbergii strain DSM 19138	294936.4	wgs	PATRIC	294936 tax ID	*
[Ref.: #66792]	Photobacterium rosenbergii DSM 19138	2858392212	draft	JGI IMG/M	294936 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Photobacterium rosenbergii strain DSM 19138 PATRIC: 294936.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Photobacterium rosenbergii strain DSM 19138 PATRIC: 294936.4
[Ref.: #69480]	gram-positive	no	98.638	no
[Ref.: #69480]	anaerobic	no	94.942	no
[Ref.: #69480]	halophile	no	56.351	no
[Ref.: #69480]	spore-forming	no	93.317	no
[Ref.: #69480]	glucose-util	yes	90.926	no
[Ref.: #69480]	motile	yes	91.327	no
[Ref.: #69480]	flagellated	yes	86.448	no
[Ref.: #69480]	aerobic	yes	76.184	no
[Ref.: #69480]	glucose-ferment	yes	88.687	no
[Ref.: #69480]	thermophile	no	99.719	yes

Availability in culture collections External links

[Ref.: #7835]

Culture collection no.

DSM 19138, CAIM 911, CBMAI 622, LMG 22223

[Ref.: #86230]

SI-ID 129638

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Photobacterium atrarenae sp. nov. a novel bacterium isolated from sea sand.	Kim BC, Poo H, Kim MN, Lee KH, Lee J, Rhee MS, Shin KS	Curr Microbiol	10.1007/s00284-011-9994-1	2011	*
Phylogeny	Photobacterium gaetbulicola sp. nov., a lipolytic bacterium isolated from a tidal flat sediment.	Kim YO, Kim KK, Park S, Kang SJ, Lee JH, Lee SJ, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.016923-0	2009	*
Phylogeny	Photobacterium halotolerans sp. nov., isolated from Lake Martel in Spain.	Rivas R, Garcia-Fraile P, Mateos PF, Martinez-Molina E, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijs.0.64099-0	2006	*
Phylogeny	Photobacterium rosenbergii sp. nov. and Enterovibrio coralii sp. nov., vibrios associated with coral bleaching.	Thompson FL, Thompson CC, Naser S, Hoste B, Vandemeulebroecke K, Munn C, Bourne D, Swings J	Int J Syst Evol Microbiol	10.1099/ijs.0.63370-0	2005	*

References

#7835

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19138

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86230

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID129638.1 )

* These data were automatically processed and therefore are not curated

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Photobacterium rosenbergii strain DSM 19138

Photobacterium rosenbergii strain DSM 19138

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