Name: Haloferula luteola YC6886
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17213

Type strain:

Species: Haloferula luteola

Strain Designation: YC6886

Culture col. no.: DSM 21608, KCTC 22447

Strain history: <- YR Chung, Kyeongsang Univ.

NCBI tax ID(s): 595692 (species)

SI-ID 403867

DSM 21608

Section

Haloferula luteola YC6886 is an aerobe, mesophilic, rod-shaped bacterium that was isolated from roots of a halophyte, Rosetalia rugosae Thunb. ex Murray.

rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Verrucomicrobiota*
	Class	*Verrucomicrobiia*
	Order	*Verrucomicrobiales*
	Family	*Verrucomicrobiaceae*
	Genus	*Haloferula*
	Species	**Haloferula luteola**
	Full Scientific Name (LPSN)	Haloferula luteola Bibi et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.992

[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #67771]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15769]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #15769]

Culture medium growth

[Ref.: #15769]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15769]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15769]			growth	28 °C
[Ref.: #67771]			growth	25-28 °C

[Ref.: #15769]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.99

[Ref.: #67771]

Observation

quinones: MK-9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15769]	Sample type/isolated from	roots of a halophyte, Rosetalia rugosae Thunb. ex Murray
[Ref.: #15769]	Host species	Rosetalia rugosae
[Ref.: #15769]	Geographic location (country and/or sea, region)	Jinju, Namhae Island
[Ref.: #15769]	Country	Republic of Korea
[Ref.: #15769]	Country ISO 3 Code	KOR
[Ref.: #15769]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From roots of `Rosetalia rugosae`
[Ref.: #67771]	Geographic location (country and/or sea, region)	Jinju
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Aquatic plant
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ032193 (>99% sequence identity) for Haloferula luteola from Microbeatlas

Aquatic Samples	34
Soil Samples	4
Animal Samples	99
Plant Samples
Total Samples	137

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15769]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15769]	Haloferula luteola strain YC6886 16S ribosomal RNA gene, partial sequence	FJ032193	1395	ENA	595692 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Haloferula luteola YC6886	GCA_014201715	scaffold	GenBank	595692 tax ID	*
[Ref.: #66792]	Haloferula luteola DSM 21608	2861254865	draft	JGI IMG/M	595692 tax ID	*

[Ref.: #15769]	GC-content	58.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	58.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Haloferula luteola YC6886 NCBI: GCA_014201715.1
[Ref.: #69481]	spore-forming	no	73	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Haloferula luteola YC6886 NCBI: GCA_014201715.1
[Ref.: #69480]	flagellated	no	92.334	yes
[Ref.: #69480]	gram-positive	no	97.429	yes
[Ref.: #69480]	anaerobic	no	98.218	yes
[Ref.: #69480]	aerobic	yes	85.681	yes
[Ref.: #69480]	halophile	no	51.278	no
[Ref.: #69480]	spore-forming	no	95.587	no
[Ref.: #69480]	glucose-util	yes	90.909	no
[Ref.: #69480]	thermophile	no	98.891	yes
[Ref.: #69480]	motile	no	88.516	no
[Ref.: #69480]	glucose-ferment	no	80.697	no

Availability in culture collections External links

[Ref.: #15769]

Culture collection no.

DSM 21608, KCTC 22447

[Ref.: #86212]

SI-ID 403867

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloferula luteola sp. nov., an endophytic bacterium isolated from the root of a halophyte, Rosa rugosa, and emended description of the genus Haloferula.	Bibi F, Chung EJ, Yoon HS, Song GC, Jeon CO, Chung YR	Int J Syst Evol Microbiol	10.1099/ijs.0.022772-0	2010	*

References

#15769

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21608

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86212

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403867.1 )

* These data were automatically processed and therefore are not curated

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