Name: Tsukamurella spumae N1171
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17093

Type strain:

Species: Tsukamurella spumae

Strain Designation: N1171

Culture col. no.: DSM 44113, NCIMB 13947, CCUG 48751, JCM 12608, CIP 108213, IFM 10523

Strain history: NCIMB 13947 <-- M. Goodfellow N1171.

NCBI tax ID(s): 44753 (species)

Other strains from Tsukamurella spumae

T. spumae DSM 44114
T. spumae DSM 44115
T. spumae DSM 44116
T. spumae DSM 44117

Section

Tsukamurella spumae N1171 is an aerobe, mesophilic human pathogen that was isolated from foam on the surface of aeration tanks in an activated-sludge sewage-treatment plant.

aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Tsukamurellaceae*
	Genus	*Tsukamurella*
	Species	**Tsukamurella spumae**
	Full Scientific Name (PNU)	Tsukamurella spumae Nam et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %90.998

[Ref.: #58314]

Incubation period

3 days

Multimedia content

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Intellectual property rights:

[Ref.: #11408]

Intellectual property rights:

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #11408]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

[Ref.: #11408]

Culture medium composition

expand / minimize

[Ref.: #32903]

Culture medium

MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum

[Ref.: #32903]

Culture medium growth

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #11408]	growth	28 °C
[Ref.: #32903]	growth	30 °C
[Ref.: #58314]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #11408]	Temperature range	mesophilic
[Ref.: #32903]	Temperature range	mesophilic
[Ref.: #58314]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #58314]

Oxygen tolerance

aerobe

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Ability of spore formation

no Confidence in %99.993

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Observation

quinones: MK-9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11408]	Sample type/isolated from	foam on the surface of aeration tanks in an activated-sludge sewage-treatment plant
[Ref.: #11408]	Continent	Europe

[Ref.: #58314]	Sample type/isolated from	Sludge,foam on the surface of aeration tanks
[Ref.: #58314]	Geographic location (country and/or sea, region)	England
[Ref.: #58314]	Country	United Kingdom
[Ref.: #58314]	Country ISO 3 Code	GBR
[Ref.: #58314]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Activated sludge foam
[Ref.: #67770]	Geographic location (country and/or sea, region)	near Nottingham
[Ref.: #67770]	Country	United Kingdom
[Ref.: #67770]	Country ISO 3 Code	GBR
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	#Container (Reservoir)
#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Water treatment plant
#Environmental	#Aquatic	#Foam

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Z37150 (>99% sequence identity) for Tsukamurella from Microbeatlas

Aquatic Samples	2978
Soil Samples	3431
Animal Samples	5160
Plant Samples	790
Total Samples	12359

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11408]	Pathogenicity (human)	yes, in single cases
[Ref.: #11408]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #11408]	T.spumae gene for 16S ribosomal RNA	Z37150	1474	ENA	44753 tax ID
[Ref.: #20218]	Tsukamurella spumae strain DSM 44113 16S ribosomal RNA gene, partial sequence	KF410367	1366	ENA	44753 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Tsukamurella spumae DSM 44113	GCA_012396015	contig	GenBank	44753 tax ID
[Ref.: #66792]	Tsukamurella spumae strain DSM 44113	44753.4	wgs	PATRIC	44753 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Tsukamurella spumae strain DSM 44113 PATRIC: 44753.4
[Ref.: #69480]	gram-positive	yes	100	no
[Ref.: #69480]	anaerobic	no	98.402	yes
[Ref.: #69480]	spore-forming	no	99.993	yes
[Ref.: #69480]	thermophile	no	99.866	yes
[Ref.: #69480]	motile	no	90.998	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Tsukamurella spumae strain DSM 44113 PATRIC: 44753.4
[Ref.: #69481]	spore-forming	no	71	no

Availability in culture collections External links

[Ref.: #11408]

Culture collection no.

DSM 44113, NCIMB 13947, CCUG 48751, JCM 12608, CIP 108213, IFM 10523

[Ref.: #20218]

Associated Passport(s) in StrainInfo

169229, 371491

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tsukamurella spumae sp. nov., a novel actinomycete associated with foaming in activated sludge plants.	Nam SW, Chun J, Kim S, Kim W, Zakrzewska-Czerwinska J, Goodfellow M	Syst Appl Microbiol	10.1078/072320203322497392	2003	*

References

#11408

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44113

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32903 ; Curators of the CIP;
#58314 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48751

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Tsukamurella spumae strain DSM 44113

Tsukamurella spumae strain DSM 44113

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