Name: Mesotoga prima MesG1.Ag.4.2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17075

Type strain:

Species: Mesotoga prima

Strain Designation: MesG1.Ag.4.2

Culture col. no.: DSM 24739, ATCC BAA-2239

Strain history: <- C. Nesbø, Univ. Alberta, Edmonton, Canada; MesG1.Ag.4.2 <- M. Dlutek, Dalhousie Univ., Canada {2006}

NCBI tax ID(s): 1184387 (species)

SI-ID 397562

DSM 24739

Other strains from Mesotoga prima

M. prima Phosphoac3, PhosAc3, DSM 24444

Section

Mesotoga prima MesG1.Ag.4.2 is an anaerobe, mesophilic bacterium that was isolated from sediment.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermotogota*
	Class	*Thermotogae*
	Order	*Kosmotogales*
	Family	*Kosmotogaceae*
	Genus	*Mesotoga*
	Species	**Mesotoga prima**
	Full Scientific Name (LPSN)	Mesotoga prima Nesbø et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #17746]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17746]

Culture medium

OCEANOTAGA MEDIUM (DSMZ Medium 1163a)

[Ref.: #17746]

Culture medium growth

[Ref.: #17746]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17746]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17746]			growth	37 °C

[Ref.: #17746]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #17746]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17746]	Sample type/isolated from	sediment
[Ref.: #17746]	Geographic location (country and/or sea, region)	Baltimore harbor
[Ref.: #17746]	Country	USA
[Ref.: #17746]	Country ISO 3 Code	USA
[Ref.: #17746]	Continent	North America
[Ref.: #17746]	Geographic location	39.2833°/-76.6000°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM003109 (>99% sequence identity) for Mesotoga prima subclade from Microbeatlas

Aquatic Samples	513
Soil Samples	21
Animal Samples	37
Plant Samples	17
Total Samples	588

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17746]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17746]	Mesotoga prima MesG1.Ag.4.2 clone 16S.B 16S ribosomal RNA gene, partial sequence	HM003109	1398	ENA	660470 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mesotoga prima MesG1.Ag.4.2 mesG1.Ag.4.2	GCA_000147715	complete	GenBank	660470 tax ID	*
[Ref.: #66792]	Mesotoga prima MesG1.Ag.4.2	660470.3	wgs	PATRIC	660470 tax ID	*

[Ref.: #17746]

GC-content

45.3 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mesotoga prima MesG1.Ag.4.2 MesG1.Ag.4.2 NCBI: GCA_000147715.3
[Ref.: #69480]	motile	no	88.572	no
[Ref.: #69480]	flagellated	no	98.387	no
[Ref.: #69480]	gram-positive	no	89.081	no
[Ref.: #69480]	anaerobic	yes	99.242	yes
[Ref.: #69480]	aerobic	no	96.824	yes
[Ref.: #69480]	halophile	no	83.706	no
[Ref.: #69480]	spore-forming	no	90.166	no
[Ref.: #69480]	thermophile	yes	90.593	yes
[Ref.: #69480]	glucose-util	yes	91.022	no
[Ref.: #69480]	glucose-ferment	no	55.634	no

Availability in culture collections External links

[Ref.: #17746]

Culture collection no.

DSM 24739, ATCC BAA-2239

[Ref.: #86075]

SI-ID 397562

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome sequence of Mesotoga strain PhosAC3, a mesophilic member of the bacterial order Thermotogales, isolated from a digestor treating phosphogypsum in Tunisia.	Ben Hania W, Fadhlaoui K, Brochier-Armanet C, Persillon C, Postec A, Hamdi M, Dolla A, Ollivier B, Fardeau ML, Le Mer J, Erauso G	Stand Genomic Sci	10.1186/1944-3277-10-12	2015	*
Genetics	Genome sequence of the mesophilic Thermotogales bacterium Mesotoga prima MesG1.Ag.4.2 reveals the largest Thermotogales genome to date.	Zhaxybayeva O, Swithers KS, Foght J, Green AG, Bruce D, Detter C, Han S, Teshima H, Han J, Woyke T, Pitluck S, Nolan M, Ivanova N, Pati A, Land ML, Dlutek M, Doolittle WF, Noll KM, Nesbo CL	Genome Biol Evol	10.1093/gbe/evs059	2012	*
Phylogeny	Mesotoga prima gen. nov., sp. nov., the first described mesophilic species of the Thermotogales.	Nesbo CL, Bradnan DM, Adebusuyi A, Dlutek M, Petrus AK, Foght J, Doolittle WF, Noll KM	Extremophiles	10.1007/s00792-012-0437-0	2012	*

References

#17746

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24739

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86075

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397562.1 )

* These data were automatically processed and therefore are not curated

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Mesotoga prima MesG1.Ag.4.2 MesG1.Ag.4.2

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