Name: Actinoallomurus iriomotensis TT02-47
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17010

Type strain:

Species: Actinoallomurus iriomotensis

Strain Designation: TT02-47

Culture col. no.: DSM 45448, KCTC 19539, NBRC 103685

Strain history: <- T Tamura, NBRC, Japan

NCBI tax ID(s): 478107 (species)

SI-ID 397094

DSM 45448

Special Collections

Section

Actinoallomurus iriomotensis TT02-47 is an aerobe, spore-forming, rod-shaped bacterium that was isolated from meadow soil.

rod-shaped
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Thermomonosporaceae*
	Genus	*Actinoallomurus*
	Species	**Actinoallomurus iriomotensis**
	Full Scientific Name (LPSN)	Actinoallomurus iriomotensis Tamura et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive

[Ref.: #29127]	Cell length	1.15 µm
[Ref.: #29127]	Cell length	0.9 µm

[Ref.: #29127]	Cell width	0.95 µm
[Ref.: #29127]	Cell width	0.6 µm

[Ref.: #29127]	Cell shape	rod-shaped
[Ref.: #29127]	Cell shape	rod-shaped

[Ref.: #29127]	Motility	no
[Ref.: #29127]	Motility	no

[Ref.: #29127]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16837]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #16837]

Culture medium growth

[Ref.: #16837]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16837]

Culture medium composition

expand / minimize

[Ref.: #16837]

Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

[Ref.: #16837]

Culture medium growth

[Ref.: #16837]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16837]

Culture medium composition

expand / minimize

[Ref.: #16837]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #16837]

Culture medium growth

[Ref.: #16837]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16837]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16837]	growth	28 °C
[Ref.: #29127]	growth	20-37 °C
[Ref.: #29127]	optimum	28.5 °C
[Ref.: #67771]	growth	28 °C

		pH
[Ref.: #29127]	optimum	6
[Ref.: #29127]	optimum	5.5
[Ref.: #29127]	growth	05-06
[Ref.: #29127]	growth	05-07

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29127]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #29127]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29127]		NaCl		growth	0-2	%
[Ref.: #29127]		NaCl		optimum	1	%

[Ref.: #29127]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29127]	2-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #29127]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #29127]	arabinose ChEBI	+	carbon source
[Ref.: #29127]	cellobiose ChEBI	+	carbon source
[Ref.: #29127]	esculin ChEBI	+	hydrolysis
[Ref.: #29127]	fructose ChEBI	+	carbon source
[Ref.: #29127]	fucose ChEBI	+	carbon source
[Ref.: #29127]	galactose ChEBI	+	carbon source
[Ref.: #29127]	glucosamine ChEBI	+	carbon source
[Ref.: #29127]	glucose ChEBI	+	carbon source
[Ref.: #29127]	glycerol ChEBI	+	carbon source
[Ref.: #29127]	glycogen ChEBI	+	carbon source
[Ref.: #29127]	L-arabitol ChEBI	+	carbon source
[Ref.: #29127]	lactose ChEBI	+	carbon source
[Ref.: #29127]	leucine ChEBI	+	carbon source
[Ref.: #29127]	maltose ChEBI	+	carbon source
[Ref.: #29127]	mannitol ChEBI	+	carbon source
[Ref.: #29127]	mannose ChEBI	+	carbon source
[Ref.: #29127]	melibiose ChEBI	+	carbon source
[Ref.: #29127]	myo-inositol ChEBI	+	carbon source
[Ref.: #29127]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29127]	nitrate ChEBI	+	reduction
[Ref.: #29127]	raffinose ChEBI	+	carbon source
[Ref.: #29127]	rhamnose ChEBI	+	carbon source
[Ref.: #29127]	ribitol ChEBI	+	carbon source
[Ref.: #29127]	ribose ChEBI	+	carbon source
[Ref.: #29127]	salicin ChEBI	+	carbon source
[Ref.: #29127]	sorbitol ChEBI	+	carbon source
[Ref.: #29127]	sucrose ChEBI	+	carbon source
[Ref.: #29127]	trehalose ChEBI	+	carbon source
[Ref.: #29127]	xylitol ChEBI	+	carbon source
[Ref.: #29127]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29127]	acid phosphatase	+	3.1.3.2
[Ref.: #29127]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29127]	catalase	+	1.11.1.6
[Ref.: #29127]	gelatinase	+
[Ref.: #29127]	pyrazinamidase	+	3.5.1.B15

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16837]	Sample type/isolated from	meadow soil
[Ref.: #16837]	Geographic location (country and/or sea, region)	Iriomote Island, Okinawa
[Ref.: #16837]	Country	Japan
[Ref.: #16837]	Country ISO 3 Code	JPN
[Ref.: #16837]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From meadow soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Iriomote Island, Okinawa
[Ref.: #67771]	Country	Japan
[Ref.: #67771]	Country ISO 3 Code	JPN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Meadow
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB364586 (>99% sequence identity) for Actinoallomurus from Microbeatlas

Aquatic Samples	36
Soil Samples	964
Animal Samples	24
Plant Samples	92
Total Samples	1116

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16837]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Actinoallomurus iriomotensis gene for 16S rRNA, partial sequence, strain: TT02-47 (= NBRC 103685)	AB364586	1447	GenBank ENA	478107 tax ID

[Ref.: #16837]	GC-content	71 mol%
[Ref.: #29127]	GC-content	72 mol%

Availability in culture collections External links

[Ref.: #16837]

Culture collection no.

DSM 45448, KCTC 19539, NBRC 103685

[Ref.: #86011]

SI-ID 397094

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoallomurus oryzae sp. nov., an endophytic actinomycete isolated from roots of a Thai jasmine rice plant.	Indananda C, Thamchaipenet A, Matsumoto A, Inahashi Y, Duangmal K, Takahashi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.022509-0	2010	*
Phylogeny	Transfer of Actinomadura spadix Nonomura and Ohara 1971 to Actinoallomurus spadix gen. nov., comb. nov., and description of Actinoallomurus amamiensis sp. nov., Actinoallomurus caesius sp. nov., Actinoallomurus coprocola sp. nov., Actinoallomurus fulvus sp. nov., Actinoallomurus iriomotensis sp. nov., Actinoallomurus luridus sp. nov., Actinoallomurus purpureus sp. nov. and Actinoallomurus yoronensis sp. nov.	Tamura T, Ishida Y, Nozawa Y, Otoguro M, Suzuki K	Int J Syst Evol Microbiol	10.1099/ijs.0.006858-0	2009	*

References

#16837

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45448

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29127

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25553 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86011

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397094.1 )

#25553

IJSEM 1867 2009 ( DOI 10.1099/ijs.0.006858-0 , PubMed 19567582 )

* These data were automatically processed and therefore are not curated

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