Actinoallomurus iriomotensis (DSM 45448, KCTC 19539, NBRC 103685)

Name: Actinoallomurus iriomotensis (DSM 45448, KCTC 19539, NBRC 103685)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17010

Type strain

Strain Designation TT02-47

Culture col. no. DSM 45448 KCTC 19539 NBRC 103685 TT02-47

NCBI tax ID(s) 478107

Special Collections DSMZ KCTC Literature strains

History <- NBRC; NBRC 103685 <- T. Tamura; TT02-47 <- T Tamura, NBRC, Japan

Links

Actinoallomurus iriomotensis TT02-47 is an aerobe, spore-forming, mesophilic prokaryote that was isolated from meadow soil.

spore-forming rod-shaped aerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 397094

KCTC 19539,NBRC 103685,DSM 45448

@ref 20215

Last LPSN update 2026-02-09 11:22:06

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Thermomonosporaceae

Genus Actinoallomurus

Species Actinoallomurus iriomotensis

Full scientific name Actinoallomurus iriomotensis Tamura et al. 2009

Morphology

Cell morphology

@ref	Cell length	Cell width	Cell shape	Gram stain
29127	1.15 µm	0.95 µm	rod-shaped
29127	0.9 µm	0.6 µm	rod-shaped
67771				positive

Pigmentation

29127

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16837	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
16837	ISP2 MEDIUM (DSMZ Medium 987)	Medium recipe at MediaDive	Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water
16837	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16837	positive	growth	28	mesophilic
29127	positive	growth	20-37
29127	positive	optimum	28.5	mesophilic
67771	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH
29127	positive	optimum	6
29127	positive	optimum	5.5
29127	positive	growth	05-06
29127	positive	growth	05-07

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
29127	aerobe
67771	aerobe

Spore formation

29127

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29127	NaCl	positive	growth	0-2 %
29127	NaCl	positive	optimum	1 %

Observation

29127

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29127	16808 ChEBI	2-dehydro-D-gluconate	+	carbon source
29127	58143 ChEBI	5-dehydro-D-gluconate	+	carbon source
29127	22599 ChEBI	arabinose	+	carbon source
29127	17057 ChEBI	cellobiose	+	carbon source
29127	4853 ChEBI	esculin	+	hydrolysis
29127	28757 ChEBI	fructose	+	carbon source
29127	33984 ChEBI	fucose	+	carbon source
29127	28260 ChEBI	galactose	+	carbon source
29127	5417 ChEBI	glucosamine	+	carbon source
29127	17234 ChEBI	glucose	+	carbon source
29127	17754 ChEBI	glycerol	+	carbon source
29127	28087 ChEBI	glycogen	+	carbon source
29127	18403 ChEBI	L-arabitol	+	carbon source
29127	17716 ChEBI	lactose	+	carbon source
29127	25017 ChEBI	leucine	+	carbon source
29127	17306 ChEBI	maltose	+	carbon source
29127	29864 ChEBI	mannitol	+	carbon source
29127	37684 ChEBI	mannose	+	carbon source
29127	28053 ChEBI	melibiose	+	carbon source
29127	17268 ChEBI	myo-inositol	+	carbon source
29127	506227 ChEBI	N-acetylglucosamine	+	carbon source
29127	17632 ChEBI	nitrate	+	reduction
29127	16634 ChEBI	raffinose	+	carbon source
29127	26546 ChEBI	rhamnose	+	carbon source
29127	15963 ChEBI	ribitol	+	carbon source
29127	33942 ChEBI	ribose	+	carbon source
29127	17814 ChEBI	salicin	+	carbon source
29127	30911 ChEBI	sorbitol	+	carbon source
29127	17992 ChEBI	sucrose	+	carbon source
29127	27082 ChEBI	trehalose	+	carbon source
29127	17151 ChEBI	xylitol	+	carbon source
29127	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29127	acid phosphatase	+	3.1.3.2
29127	alkaline phosphatase	+	3.1.3.1
29127	catalase	+	1.11.1.6
29127	gelatinase	+
29127	pyrazinamidase	+	3.5.1.B15

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Meadow
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16837	meadow soil	Iriomote Island, Okinawa	Japan	JPN	Asia
67771	From meadow soil	Iriomote Island, Okinawa	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB364586 (>99% sequence identity) for Actinoallomurus from Microbeatlas

Aquatic Samples	36
Soil Samples	964
Animal Samples	24
Plant Samples	92
Total Samples	1116

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16837	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67771	Actinoallomurus iriomotensis gene for 16S rRNA, partial sequence, strain: TT02-47 (= NBRC 103685)	AB364586	1447		478107

GC content

@ref	GC-content (mol%)
16837	71
29127	72

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoallomurus oryzae sp. nov., an endophytic actinomycete isolated from roots of a Thai jasmine rice plant.	Indananda C, Thamchaipenet A, Matsumoto A, Inahashi Y, Duangmal K, Takahashi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.022509-0	2010
Phylogeny	Transfer of Actinomadura spadix Nonomura and Ohara 1971 to Actinoallomurus spadix gen. nov., comb. nov., and description of Actinoallomurus amamiensis sp. nov., Actinoallomurus caesius sp. nov., Actinoallomurus coprocola sp. nov., Actinoallomurus fulvus sp. nov., Actinoallomurus iriomotensis sp. nov., Actinoallomurus luridus sp. nov., Actinoallomurus purpureus sp. nov. and Actinoallomurus yoronensis sp. nov.	Tamura T, Ishida Y, Nozawa Y, Otoguro M, Suzuki K	Int J Syst Evol Microbiol	10.1099/ijs.0.006858-0	2009

References

#16837	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45448
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25553	IJSEM 1867 2009 ( DOI 10.1099/ijs.0.006858-0 , PubMed 19567582 )
#29127	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25553
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinoallomurus iriomotensis (DSM 45448, KCTC 19539, NBRC 103685)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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