Micromonospora antibiotica (MMS20-R2-23, KCTC 49542, JCM 34495)

Name: Micromonospora antibiotica (MMS20-R2-23, KCTC 49542, JCM 34495)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 169828

Type strain

Strain Designation MMS20-R2-23

Culture col. no. MMS20-R2-23 KCTC 49542 JCM 34495

NCBI tax ID(s) 2807623

Special Collections JCM KCTC

Links

Micromonospora antibiotica MMS20-R2-23 is a prokaryote of the family Micromonosporaceae.

genome sequence 16S sequence

Name and taxonomic classification

SI-ID 25593

KCTC49542,JCM-34495

@ref 20215

Last LPSN update 2025-12-16 10:10:40

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora antibiotica

Full scientific name Micromonospora antibiotica Lee et al. 2022

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	90.086
125439		94.8
125439	positive	99.9

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.6

Spore formation

@ref	Spore formation	Confidence
125439		97.8
125438		91.954

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1759930v1 assembly for Micromonospora antibiotica MMS20-R2-23	scaffold	GCA_017599305	2807623.3	8003863891	2807623	61.47

Genome browser: GCA_017599305

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Micromonospora antibiotica strain MMS20-R2-23 16S ribosomal RNA gene, partial sequence	MW063658	1442		2807623

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Micromonospora antibiotica MMS20-R2-23
NCBI: GCA_017599305

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	97.80	no
125439	motility	BacteriaNetⓘ	no	94.80	no
125439	gram_stain	BacteriaNetⓘ	positive	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora antibiotica MMS20-R2-23
NCBI: GCA_017599305.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.09	no
125438	anaerobic	anaerobicⓘ	no	95.25	no
125438	aerobic	aerobicⓘ	yes	88.12	no
125438	spore-forming	spore-formingⓘ	yes	91.95	no
125438	thermophilic	thermophileⓘ	no	94.48	no
125438	flagellated	motile2+ⓘ	no	89.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micromonospora antibiotica sp. nov. and Micromonospora humidisoli sp. nov., two new actinobacterial species exhibiting antimicrobial potential.	Lee DH, Ra JS, Kim MJ, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.005522	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Micromonospora antibiotica (MMS20-R2-23, KCTC 49542, JCM 34495)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_017599305

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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