"Actinomadura luzonensis" (DSM 43766, ATCC 31491, I 58)

BacDive ID 16953

Type strain

Strain Designation I 58, G455-101

Culture col. no. DSM 43766 ATCC 31491 I 58 IFO 14989 IMET 9733 7 more

NCBI tax ID(s) 1989 2805427

Special Collections DSMZ JCM JMRC

History DSMZ <- N.S. Agre, VKM (Actinomadura luzonensis) <- K. Tomita, G455-101 JCM <-- IFO 14989 <-- VKM Ac-873 <-- K. Tomita G455-101.

Links

"Actinomadura luzonensis" I 58 is a bacterium that was isolated from soil.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 40088

ATCC 31491,DSM 43766,IFO 14989,IMET 9733,VKM Ac-873,JCM 10120,NBRC 14989

@ref 20215

Last LPSN update 2026-05-29 08:28:54

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Thermomonosporaceae

Genus Actinomadura

Species "Actinomadura luzonensis"

Full scientific name Actinomadura luzonensis Tomita et al. 1980

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125439		92.66
125439		99.666	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
11054	GPHF-MEDIUM (DSMZ Medium 553)		Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
11054	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
11054	positive	growth	37
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.471

Compound production

@ref	Compound
11054	antitumor antibacterial antibiotic complex
11054	BBM-928
20216	Antitumor agent
20216	antibacterial antibiotic complex
67770	Antitumor antibiotic complex BBM-928

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
11054	soil
67770	Soil	Luzon Island	Philippines	PHL	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM2266445v2 assembly for Actinomadura luzonensis ATCC 31491	scaffold	GCA_022664455	2917990.5	2917990	63.18

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2266445v2 assembly for Actinomadura luzonensis ATCC 31491
NCBI: GCA_022664455

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.47	no
125439	gram_stain	BacteriaNetⓘ	positive	99.67	no
125439	motility	BacteriaNetⓘ	no	92.66	no
125439	spore_formation	BacteriaNetⓘ	yes	88.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinomadura sp. ATCC 31491 ATCC 31491
NCBI: GCA_022664455.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.07	no
125438	anaerobic	anaerobicⓘ	no	92.63	no
125438	aerobic	aerobicⓘ	yes	86.22	no
125438	spore-forming	spore-formingⓘ	yes	88.19	no
125438	thermophilic	thermophileⓘ	no	94.50	no
125438	flagellated	motile2+ⓘ	no	84.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Conversion of a Heme-Dependent Dehydratase to a Piperazate Synthase Reveals the Role of the Heme Propionate Group in N-N Bond-Formation.	Higgins MA, Mirotadze N, Shi X, Hoffarth ER, Du YL, Ryan KS.	J Am Chem Soc	10.1021/jacs.5c08886	2025
Metabolism	BBM-928, a new antitumor antibiotic complex. II. Taxonomic studies on the producing organism.	Tomita K, Hoshino Y, Sasahira T, Kawaguchi H.	J Antibiot (Tokyo)	10.7164/antibiotics.33.1098	1980

References

#11054	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43766
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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"Actinomadura luzonensis" (DSM 43766, ATCC 31491, I 58)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Compound production

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_022664455

Genome-based predictions

Predictions

Literature

Literature

References

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