Name: Stenotrophomonas rhizophila IS26
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 169469

Type strain:

Species: Stenotrophomonas rhizophila

Strain Designation: IS26

Culture col. no.: DSM 112992

NCBI tax ID(s): 216778 (species)

SI-ID 408357

DSM 112992

Special Collections

DSMZ

Other strains from Stenotrophomonas rhizophila

Section

Stenotrophomonas rhizophila IS26 is a Gram-negative bacterium that was isolated from roots of Lygeum spartum<\i> L..

Gram-negative

Bacteria

genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

Last LPSN update 14-12-2023 (DD-MM-YYYY)

Domain "Bacteria"

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Stenotrophomonas

Species Stenotrophomonas rhizophila

Full Scientific Name (LPSN) Stenotrophomonas rhizophila Wolf et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #69480] Gram stain negative Confidence in %95.509

Multimedia content

[Ref.: #68753] Caption: DSM 112992 on medium 535 at 28 °C

[Ref.: #68753] Intellectual property rights: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #68753] Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #68753] Culture medium growth

[Ref.: #68753] Culture medium link Medium recipe provided by DSMZ

[Ref.: #68753] Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #68753] Culture medium growth

[Ref.: #68753] Culture medium link Medium recipe provided by DSMZ

Temperatures Kind of temperature Temperature

[Ref.: #68753] growth 28 °C

Information on physiology and metabolism Physiology and metabolism

Metabolite utilization Metabolite Utilization activity Kind of utilization tested

[Ref.: #68369] adipate ChEBI - assimilation * from API 20NE

[Ref.: #68369] arginine ChEBI - hydrolysis * from API 20NE

[Ref.: #68369] D-glucose ChEBI + assimilation * from API 20NE

[Ref.: #68369] D-glucose ChEBI - fermentation * from API 20NE

[Ref.: #68369] D-mannitol ChEBI - assimilation * from API 20NE

[Ref.: #68369] D-mannose ChEBI + assimilation * from API 20NE

[Ref.: #68369] decanoate ChEBI - assimilation * from API 20NE

[Ref.: #68369] esculin ChEBI + hydrolysis * from API 20NE

[Ref.: #68369] gelatin ChEBI + hydrolysis * from API 20NE

[Ref.: #68369] gluconate ChEBI - assimilation * from API 20NE

[Ref.: #68369] L-arabinose ChEBI - assimilation * from API 20NE

[Ref.: #68369] malate ChEBI + assimilation * from API 20NE

[Ref.: #68369] maltose ChEBI + assimilation * from API 20NE

[Ref.: #68369] N-acetylglucosamine ChEBI + assimilation * from API 20NE

[Ref.: #68369] nitrate ChEBI - reduction * from API 20NE

[Ref.: #68369] tryptophan ChEBI - energy source * from API 20NE

[Ref.: #68369] urea ChEBI - hydrolysis * from API 20NE

Only first 10 entries are displayed. Click here to see all.

Metabolite production Metabolite Production

[Ref.: #68369] indole ChEBI no * from API 20NE

Physiological tests Metabolite Indole test

[Ref.: #68369] indole ChEBI - * from API 20NE

Enzymes Enzyme Enzyme activity EC number

[Ref.: #68369] arginine dihydrolase - 3.5.3.6 * from API 20NE

[Ref.: #68369] beta-glucosidase + 3.2.1.21 * from API 20NE

[Ref.: #68369] cytochrome oxidase - 1.9.3.1 * from API 20NE

[Ref.: #68369] gelatinase + * from API 20NE

[Ref.: #68369] urease - 3.5.1.5 * from API 20NE

API® 20NE: Note that the displayed test results represent raw data and therefore may deviate!

API ID Reduction of nitratesNO3 Indole productionTRP Fermentation of D-glucoseGLU_ Ferm Arginine dihydrolaseADH (Arg) Urease/urea hydrolysisURE Esculin hydrolysis/beta-GlucosidaseESC Gelatinase/gelatin hydrolysisGEL beta-GalactosidasePNPG Assimilation of D-glucoseGLU_ Assim Assimilation of L-arabinoseARA Assimilation of D-mannoseMNE Assimilation of D-mannitolMAN Assimilation of N-acetyl-glucosamineNAG Assimilation of maltoseMAL Assimilation of gluconateGNT Assimilation of capric acidCAP Assimilation adipic acidADI Assimilation of malic acidMLT Assimilation of citric acidCIT Assimilation of phenyl-acetic acidPAC Cytochrome oxidaseOX

[Ref.: #68753] 25226 - - - - - + + + + - + - + + - - - + + - -

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68753] Sample type/isolated from roots of Lygeum spartum<\i> L.

[Ref.: #68753] Geographic location (country and/or sea, region) Djelfa

[Ref.: #68753] Country Algeria

[Ref.: #68753] Country ISO 3 Code DZA

[Ref.: #68753] Continent Africa

[Ref.: #68753] Geographic location 34.8342°/3.0996°

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #68753] Biosafety level 1 Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

Sequence accession description Seq. accession number Assembly level Sequence database Associated NCBI tax ID

[Ref.: #66792] Stenotrophomonas rhizophila IS26 GCA_009184355 contig
GenBank
ENA
216778 tax ID *

Data predicted using genome information as a basis Genome-based predictions

Predictions from Diaspora project based on:
Stenotrophomonas rhizophila IS26
NCBI: GCA_009184355.1

Trait Model Prediction Confidence in % In training data

[Ref.: #69480] gram-positive gram-positiveⓘ no 95.509 no

[Ref.: #69480] anaerobic anaerobicⓘ no 96.839 no

[Ref.: #69480] aerobic aerobicⓘ yes 82.34 no

[Ref.: #69480] spore-forming spore-formingⓘ no 89.43 no

[Ref.: #69480] thermophilic thermophileⓘ no 97 yes

[Ref.: #69480] flagellated motile2+ⓘ yes 72.446 no

Availability in culture collections External links

[Ref.: #68753] Culture collection no. DSM 112992

[Ref.: #115683] SI-ID 408357 *

References

#20215 Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792 Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369 Automatically annotated from API 20NE .

#68753 Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 112992

#69480 Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#115683 Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408357.1 )

* These data were automatically processed and therefore are not curated

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