Clostridium gallinarum (DSM 112313, Sa3CUN1)

Name: Clostridium gallinarum (DSM 112313, Sa3CUN1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 169468

Type strain

Strain Designation Sa3CUN1

Culture col. no. DSM 112313 Sa3CUN1

NCBI tax ID(s) 2762246

Special Collections DSMZ DZIF

Links

Clostridium gallinarum Sa3CUN1 is a bacterium that was isolated from chicken faeces.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 397211

NCTC-14701,DSM 112313

@ref 20215

Last LPSN update 2026-02-09 11:41:03

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium gallinarum

Full scientific name Clostridium gallinarum Pallen 2024

Synonyms (1)

"Clostridium gallinarum"

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
68752	FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)		Medium recipe at MediaDive	Name: FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203) Composition: Horse blood 100.0 g/l Fastidious Anaerobe Agar 45.7 g/l Deionized water
68752	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
68752	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	99.3

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
68752	chicken faeces	Norwich	United Kingdom	GBR	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1483632v1 assembly for Clostridium gallinarum Sa3CUN1	scaffold	GCA_014836325	2762246.3	8007385546	2762246	47.76

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Clostridium gallinarum Sa3CUN1
NCBI: GCA_014836325

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	87.80	no
125439	motility	BacteriaNetⓘ	yes	83.80	no
125439	gram_stain	BacteriaNetⓘ	positive	85.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	99.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium gallinarum Sa3CUN1
NCBI: GCA_014836325.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	65.88	no
125438	anaerobic	anaerobicⓘ	yes	82.75	no
125438	aerobic	aerobicⓘ	no	94.45	no
125438	spore-forming	spore-formingⓘ	yes	74.92	no
125438	thermophilic	thermophileⓘ	no	93.48	yes
125438	flagellated	motile2+ⓘ	yes	81.95	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Valid publication of names for bacterial species from the chicken gut.	Pallen MJ.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006445	2024

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68752	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 112313
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridium gallinarum (DSM 112313, Sa3CUN1)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014836325

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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