Name: Alistipes muris SPFB6_filt_col_31
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 169415

Type strain:

Species: Alistipes muris

Strain Designation: SPFB6_filt_col_31, CLA-AA-M12

Culture col. no.: DSM 112343

Strain history: <- T. Clavel, RWTH Aachen; CLA-AA-M12

NCBI tax ID(s): 2941326 (species)

Special Collections

Section

Alistipes muris SPFB6_filt_col_31 is an anaerobe, Gram-negative bacterium that was isolated from gut content; SPF, C57BL/6J mouse.

Gram-negative
anaerobe
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Rikenellaceae*
	Genus	*Alistipes*
	Species	"Alistipes muris"
	Full Scientific Name (LPSN)	Alistipes muris Afrizal et al. 2022

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.716

[Ref.: #69480]	Motility	no Confidence in %93.595

Information on culture and growth conditions Culture and growth conditions

[Ref.: #68689]

Culture medium

YCFA-MEDIUM (MODIFIED) (DSMZ Medium 1611)

[Ref.: #68689]

Culture medium growth

[Ref.: #68689]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #68689]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %96.744

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68689]	Sample type/isolated from	gut content; SPF, C57BL/6J (Fsp27-/-) mouse
[Ref.: #68689]	Geographic location (country and/or sea, region)	Aachen
[Ref.: #68689]	Country	Germany
[Ref.: #68689]	Country ISO 3 Code	DEU
[Ref.: #68689]	Continent	Europe
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Alistipes muris DSM 112343	GCA_943193205	contig	GenBank ENA	2941326 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alistipes sp. DSM 112343 Alistipes_sp_nov_DSM112343 NCBI: GCA_943193205.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.716	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	84.439	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	96.744	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	91.76	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.425	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93.595	no

Availability in culture collections External links

[Ref.: #68689]

Culture collection no.

DSM 112343

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68689

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 112343

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Alistipes sp. DSM 112343 Alistipes_sp_nov_DSM112343

Change proposal

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