Alistipes muris (DSM 112343, SPFB6_filt_col_31, CLA-AA-M12)

Name: Alistipes muris (DSM 112343, SPFB6_filt_col_31, CLA-AA-M12)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 169415

Type strain

Strain Designation SPFB6_filt_col_31, CLA-AA-M12

Culture col. no. DSM 112343 SPFB6_filt_col_31 CLA-AA-M12

NCBI tax ID(s) 2941326

Special Collections Mouse-Microbiome 2 DSMZ DZIF

Links

Alistipes muris SPFB6_filt_col_31 is a mesophilic prokaryote that was isolated from gut content; SPF, C57BL/6J mouse.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 401876

JCM37184,DSM 112343

@ref 20215

Last LPSN update 2025-12-16 10:10:35

Domain Pseudomonadati

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Rikenellaceae

Genus Alistipes

Species Alistipes muris

Full scientific name Alistipes muris Afrizal et al. 2025

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.1
125438	negative	96.716
125438		93.595

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
68689	YCFA-MEDIUM (MODIFIED) (DSMZ Medium 1611)		Medium recipe at MediaDive	Name: YCFA-MEDIUM (MODIFIED) (DSMZ Medium 1611) Composition: Casitone 10.0 g/l Glucose 5.0 g/l NaHCO3 4.0 g/l Yeast extract 2.5 g/l Acetic acid 1.78695 g/l L-Cysteine HCl 1.0 g/l NaCl 0.9 g/l Propionic acid 0.62559 g/l KH2PO4 0.45 g/l K2HPO4 0.45 g/l CaCl2 x 2 H2O 0.09 g/l n-Valeric acid 0.08451 g/l iso-Valeric acid 0.0837899 g/l iso-Butyric acid 0.07695 g/l MgSO4 x 7 H2O 0.045 g/l Hemin 0.01 g/l Resazurin 0.001 g/l Pyridoxine hydrochloride 0.0001 g/l Nicotinic acid 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavin 5e-05 g/l D-Calcium pantothenate 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Lipoic acid 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Vitamin B12 1e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
68689	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate anaerobe	99.9

Spore formation

@ref	Spore formation	Confidence
125438		96.744
125439		99.6

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
68689	gut content; SPF, C57BL/6J (Fsp27-/-) mouse	Aachen	Germany	DEU	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Alistipes_sp_nov_DSM112343 assembly for Alistipes muris DSM 112343	contig	GCA_943193205	2941326.3	8047457697	2941326	70.61

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Alistipes muris DSM 112343
NCBI: GCA_943193205

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.60	no
125439	motility	BacteriaNetⓘ	no	65.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	99.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alistipes sp. DSM 112343 Alistipes_sp_nov_DSM112343
NCBI: GCA_943193205.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.72	no
125438	anaerobic	anaerobicⓘ	yes	84.44	no
125438	spore-forming	spore-formingⓘ	no	96.74	no
125438	aerobic	aerobicⓘ	no	91.76	no
125438	thermophilic	thermophileⓘ	no	92.43	yes
125438	flagellated	motile2+ⓘ	no	93.60	no

Literature

Title	Authors	Journal	DOI	Year
Validation List no. 222. Valid publication of new names and new combinations effectively published outside the IJSEM.	Oren A, Goker M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006640	2025

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68689	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 112343
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alistipes muris (DSM 112343, SPFB6_filt_col_31, CLA-AA-M12)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_943193205

Genome-based predictions

Predictions

Literature

Literature

References

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