Archive BacDiveID:10.13145/bacdive169415.20240916.9.1

Strain identifier

BacDive ID: 169415

Type strain:

Species: Alistipes muris

Strain Designation: SPFB6_filt_col_31, CLA-AA-M12

Strain history: <- T. Clavel, RWTH Aachen; CLA-AA-M12

NCBI tax ID(s): 2941326 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 68689

BacDive-ID: 169415

DSM-Number: 112343

keywords: genome sequence, Bacteria, anaerobe, Gram-negative

description: Alistipes muris SPFB6_filt_col_31 is an anaerobe, Gram-negative bacterium that was isolated from gut content; SPF, C57BL/6J mouse.

NCBI tax id

NCBI tax id: 2941326
Matching level: species

strain history

@ref: 68689
history: <- T. Clavel, RWTH Aachen; CLA-AA-M12

doi: 10.13145/bacdive169415.20240916.9.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacteroidota
domain: Bacteria
phylum: Bacteroidota
class: Bacteroidia
order: Bacteroidales
family: Rikenellaceae
genus: Alistipes
species: Alistipes muris
full scientific name: Alistipes muris Afrizal et al. 2022

@ref: 68689

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Rikenellaceae

genus: Alistipes

species: Alistipes muris

full scientific name: Alistipes muris

strain designation: SPFB6_filt_col_31, CLA-AA-M12

type strain: no

Morphology

cell morphology

@ref	motility	confidence	gram stain
69480	no	93.595
69480		96.716	negative

Culture and growth conditions

culture medium

@ref: 68689
name: YCFA-MEDIUM (MODIFIED) (DSMZ Medium 1611)
growth: yes
link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1611.pdf

culture temp

@ref: 68689
growth: positive
type: growth
temperature: 37

Physiology and metabolism

spore formation

@ref: 69480
spore formation: no
confidence: 96.744

Isolation, sampling and environmental information

isolation

@ref: 68689
sample type: gut content; SPF, C57BL/6J (Fsp27-/-) mouse
geographic location: Aachen
country: Germany
origin.country: DEU
continent: Europe

Sequence information

Genome sequences

@ref: 66792
description: Alistipes muris DSM 112343
accession: GCA_943193205
assembly level: contig
database: ncbi
NCBI tax ID: 2941326

Genome-based predictions

predictions

@ref	trait	model	description	prediction	confidence	training_data
69480	gram-positive	gram-positive	Positive reaction to Gram-staining	no	96.716	no
69480	anaerobic	anaerobic	Ability to grow under anoxygenic conditions (including facultative anaerobes)	yes	84.439	no
69480	spore-forming	spore-forming	Ability to form endo- or exospores	no	96.744	no
69480	aerobic	aerobic	Ability to grow under oxygenic conditions (including facultative aerobes)	no	91.76	no
69480	thermophilic	thermophile	Ability to grow at temperatures above or equal to 45°C	no	92.425	yes
69480	flagellated	motile2+	Ability to perform flagellated movement	no	93.595	no

External links

@ref: 68689

culture collection no.: DSM 112343

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
68689	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-112343	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 112343)
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes