Serpens flexibilis (ATCC 29606, LMG 29034)

Name: Serpens flexibilis (ATCC 29606, LMG 29034)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 167888

Type strain

Culture col. no. ATCC 29606 LMG 29034

NCBI tax ID(s) 706570

Links

Serpens flexibilis ATCC 29606 is a bacterium of the family Pseudomonadaceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 39611

ATCC 29606,KCTC 2637,KCTC 2699,LMG 29034

@ref 20215

Last LPSN update 2026-02-09 11:40:41

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Serpens

Species Serpens flexibilis

Full scientific name Serpens flexibilis Hespell 1977 (Approved Lists 1980)

Synonyms (3)

Pseudomonas flexibilis
Pseudomonas tuomuerensis
Serpens tuomuerensis

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98.5
125439		94.7
125439	negative	99.9

Culture and growth conditions

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.5

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence GU269546 (>99% sequence identity) for Pseudomonas flexibilis subclade from Microbeatlas

Aquatic Samples	223
Soil Samples	688
Animal Samples	229
Plant Samples	119
Total Samples	1259

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20215	1	Risk group

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2681812811 annotated assembly for Pseudomonas flexibilis ATCC 29606	scaffold	GCA_900155995	706570.5	2681812811	706570	68.71
66792	ASM80242v1 assembly for Pseudomonas flexibilis ATCC 29606	contig	GCA_000802425	706570.3	2627853852	706570	68.13

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Serpens flexibilis strain ATCC 29606 16S ribosomal RNA gene, partial sequence	GU269546	1460		706570
124043	Serpens flexibilis strain ATCC 29606 16S ribosomal RNA gene, partial sequence.	KP973996	1530		706570

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas flexibilis ATCC 29606
NCBI: GCA_900155995

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.50	no
125439	motility	BacteriaNetⓘ	yes	94.70	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	70.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas flexibilis ATCC 29606
NCBI: GCA_900155995.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	no
125438	anaerobic	anaerobicⓘ	no	96.36	no
125438	aerobic	aerobicⓘ	yes	83.12	no
125438	spore-forming	spore-formingⓘ	no	89.17	no
125438	thermophilic	thermophileⓘ	no	97.50	no
125438	flagellated	motile2+ⓘ	yes	87.83	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Potential of mineral-solubilizing bacteria for physiology and growth promotion of Chenopodium quinoa Willd.	Rafique E, Mumtaz MZ, Ullah I, Rehman A, Qureshi KA, Kamran M, Rehman MU, Jaremko M, Alenezi MA.	Front Plant Sci	10.3389/fpls.2022.1004833	2022
Phylogeny	Phylogenomics studies and molecular markers reliably demarcate genus Pseudomonas sensu stricto and twelve other Pseudomonadaceae species clades representing novel and emended genera.	Rudra B, Gupta RS.	Front Microbiol	10.3389/fmicb.2023.1273665	2023
Phylogeny	Reclassification of Serpens flexibilis Hespell 1977 as Pseudomonas flexibilis comb. nov., with Pseudomonas tuomuerensis Xin et al. 2009 as a later heterotypic synonym.	Shin SK, Hwang CY, Cho YJ, Yi H	Syst Appl Microbiol	10.1016/j.syapm.2015.09.007	2015
Phylogeny	Pseudomonas flavocrustae sp. nov., an endophyte with plant growth promoting traits isolated from Passiflora incarnata.	Cueva-Yesquen LG, Sartoratto A, da Silva Santos A, de Melo IS, Fantinatti-Garboggini F.	Sci Rep	10.1038/s41598-024-64349-1	2024

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Serpens flexibilis (ATCC 29606, LMG 29034)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900155995

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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