Name: Arachidicoccus rhizosphaerae Vu-144
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 167889

Type strain:

Species: Arachidicoccus rhizosphaerae

Strain Designation: Vu-144

Culture col. no.: KCTC 22378, NCIMB 14473

NCBI tax ID(s): 551991 (species)

Special Collections

KCTC

When using BacDive for research please cite our paper

Arachidicoccus rhizosphaerae Vu-144 is a bacterium of the family Chitinophagaceae.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Arachidicoccus*
	Species	**Arachidicoccus rhizosphaerae**
	Full Scientific Name (LPSN)	Arachidicoccus rhizosphaerae Madhaiyan et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %93.872

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20215]

Biosafety level

Risk group

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20215]	Arachidicoccus rhizosphaerae strain Vu-144 16S ribosomal RNA gene, partial sequence	EU672808	1417	GenBank ENA	551991 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Arachidicoccus rhizosphaerae Vu-144	GCA_900107765	scaffold	GenBank ENA	551991 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Arachidicoccus rhizosphaerae Vu-144 NCBI: GCA_900107765.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	93.872	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	98.259	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	81.491	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	89.27	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	96.567	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	88	no

Availability in culture collections External links

[Ref.: #20215]

Culture collection no.

KCTC 22378, NCIMB 14473

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arachidicoccus terrestris sp. nov., isolated from greenhouse soil.	Won M, Weon HY, Hong SB, Han BH, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijsem.0.005391	2022	*
Phylogeny	Arachidicoccus soli sp. nov., a bacterium isolated from soil.	Lee SA, Kim TW, Sang MK, Song J, Kwon SW, Weon HY	Int J Syst Evol Microbiol	10.1099/ijsem.0.004566	2020	*
Phylogeny	Haoranjiania flava gen. nov., sp. nov., a new member of the family Chitinophagaceae, isolated from activated sludge.	Zhang L, Chen XL, Hu Q, Chen K, Yan X, Li SP, Freilich S, Jiang JD	Int J Syst Evol Microbiol	10.1099/ijsem.0.001411	2016	*
Phylogeny	Arachidicoccus rhizosphaerae gen. nov., sp. nov., a plant-growth-promoting bacterium in the family Chitinophagaceae isolated from rhizosphere soil.	Madhaiyan M, Poonguzhali S, Senthilkumar M, Pragatheswari D, Lee JS, Lee KC	Int J Syst Evol Microbiol	10.1099/ijs.0.069377-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Arachidicoccus rhizosphaerae in external resources:
SILVA
BRENDA
PANGAEA
GBIF