Kroppenstedtia eburnea (DSM 45196, CCUG 59226, NRRL B-24804)

Name: Kroppenstedtia eburnea (DSM 45196, CCUG 59226, NRRL B-24804)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16787

Type strain

Strain Designation JFMB-ATE, thermophiler Actinomycet

Culture col. no. DSM 45196 CCUG 59226 NRRL B-24804 JFMB-ATE thermophiler Actinomycet

NCBI tax ID(s) 714067

Special Collections DSMZ CCUG

History <- K. Koettnitz, Germany; JFMB-ATE

Links

Kroppenstedtia eburnea JFMB-ATE is an aerobe bacterium that was isolated from plastic surface in grade C.

aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406820

DSM 45196,CCUG 59226

@ref 20215

Last LPSN update 2026-02-09 11:22:03

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Thermoactinomycetaceae

Genus Kroppenstedtia

Species Kroppenstedtia eburnea

Full scientific name Kroppenstedtia eburnea von Jan et al. 2011

BacDive ID	Other strains from **Kroppenstedtia eburnea** (1)	Type strain
154623	K. eburnea CCUG 54615

Morphology

Multimedia

@ref:	15690
multimedia content:	DSM_45196.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45196.jpg
caption:	Medium 215 45°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15690	BHI MEDIUM (DSMZ Medium 215)		Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
15690	GPHF-MEDIUM (DSMZ Medium 553)		Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
15690	positive	growth	45
61875	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
61875	aerobe
125439	facultative anaerobe	90.9

Spore formation

@ref	Spore formation	Confidence
125438		90.106
125439		90.9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	#Engineered product

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
15690	plastic surface in grade C			Germany	DEU	Europe
61875	Environmental sample	2008-04-01	Southern Germany	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence FN665656 (>99% sequence identity) for Kroppenstedtia eburnea subclade from Microbeatlas

Aquatic Samples	380
Soil Samples	2401
Animal Samples	1244
Plant Samples	432
Total Samples	4457

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
15690	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1328221v1 assembly for Kroppenstedtia eburnea DSM 45196	complete	GCA_013282215	714067.7	8064004664	714067	90.98
66792	IMG-taxon 2681813512 annotated assembly for Kroppenstedtia eburnea DSM 45196	contig	GCA_900156615	714067.3	2681813512	714067	67.01

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15690	Thermoactinomycetaceae bacterium JFMB-ATE 16S rRNA gene, strain JFMB-ATE	FN665656	1607		714067

GC content

@ref	GC-content (mol%)	Method
15690	54.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Kroppenstedtia eburnea strain DSM 45196
PATRIC: 714067.7

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	90.90	no
125439	motility	BacteriaNetⓘ	yes	77.30	no
125439	gram_stain	BacteriaNetⓘ	variable	62.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	90.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Kroppenstedtia eburnea DSM 45196
NCBI: GCA_013282215.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	76.82	no
125438	anaerobic	anaerobicⓘ	no	96.73	no
125438	aerobic	aerobicⓘ	yes	81.59	yes
125438	spore-forming	spore-formingⓘ	yes	90.11	no
125438	thermophilic	thermophileⓘ	no	67.47	yes
125438	flagellated	motile2+ⓘ	no	53.58	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Complete and Circularized Genome Assemblies of the Kroppenstedtia eburnea Genus Type Strain and the Kroppenstedtia pulmonis Species Type Strain with MiSeq and MinION Sequence Data.	Gulvik CA, Batra D, Rowe LA, Sheth M, Humrighouse BW, Howard DT, Lee J, McQuiston JR, Lasker BA	Microbiol Resour Announc	10.1128/MRA.00650-20	2020
Phylogeny	Paludifilum halophilum gen. nov., sp. nov., a thermoactinomycete isolated from superficial sediment of a solar saltern.	Frikha-Dammak D, Fardeau ML, Cayol JL, Ben Fguira-Fourati L, Najeh S, Ollivier B, Maalej S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001523	2016
Phylogeny	Kroppenstedtia pulmonis sp. nov. and Kroppenstedtia sanguinis sp. nov., isolated from human patients.	Bell ME, Lasker BA, Klenk HP, Hoyles L, Sproer C, Schumann P, Brown JM	Antonie Van Leeuwenhoek	10.1007/s10482-016-0663-z	2016
Phylogeny	Kroppenstedtia guangzhouensis sp. nov., a thermoactinomycete isolated from soil.	Yang G, Qin D, Wu C, Yuan Y, Zhou S, Cai Y	Int J Syst Evol Microbiol	10.1099/ijs.0.051011-0	2013
Phylogeny	Kroppenstedtia eburnea gen. nov., sp. nov., a thermoactinomycete isolated by environmental screening, and emended description of the family Thermoactinomycetaceae Matsuo et al. 2006 emend. Yassin et al. 2009.	von Jan M, Riegger N, Potter G, Schumann P, Verbarg S, Sproer C, Rohde M, Lauer B, Labeda DP, Klenk HP	Int J Syst Evol Microbiol	10.1099/ijs.0.026179-0	2010

References

#15690	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45196
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#61875	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59226
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Kroppenstedtia eburnea (DSM 45196, CCUG 59226, NRRL B-24804)

Name and taxonomic classification

Morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_013282215

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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