Name: Kroppenstedtia eburnea JFMB-ATE
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16787

Type strain:

Species: Kroppenstedtia eburnea

Strain Designation: JFMB-ATE, thermophiler Actinomycet

Culture col. no.: DSM 45196, CCUG 59226, NRRL B-24804

Strain history: <- K. Koettnitz, Germany; JFMB-ATE

NCBI tax ID(s): 714067 (species)

SI-ID 406820

DSM 45196, CCUG 59226

Other strains from Kroppenstedtia eburnea

K. eburnea CCUG 54615

Section

Kroppenstedtia eburnea JFMB-ATE is an aerobe, spore-forming, thermophilic human pathogen that was isolated from plastic surface in grade C.

Gram-positive
spore-forming
aerobe
human pathogen
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Thermoactinomycetaceae*
	Genus	*Kroppenstedtia*
	Species	**Kroppenstedtia eburnea**
	Full Scientific Name (LPSN)	Kroppenstedtia eburnea von Jan et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Multimedia content

[Ref.: #15690]

Caption:

Medium 215 45°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

BHI MEDIUM (DSMZ Medium 215)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #15690]			growth	45 °C
[Ref.: #61875]			growth	37 °C

[Ref.: #15690]	Temperature range	thermophilic
[Ref.: #61875]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #61875]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15690]	Sample type/isolated from	plastic surface in grade C
[Ref.: #15690]	Country	Germany
[Ref.: #15690]	Country ISO 3 Code	DEU
[Ref.: #15690]	Continent	Europe

[Ref.: #61875]	Sample type/isolated from	Environmental sample
[Ref.: #61875]	Sampling date	2008-04-01
[Ref.: #61875]	Geographic location (country and/or sea, region)	Southern Germany
[Ref.: #61875]	Country	Germany
[Ref.: #61875]	Country ISO 3 Code	DEU
[Ref.: #61875]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered

#Industrial

#Engineered product

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FN665656 (>99% sequence identity) for Kroppenstedtia eburnea subclade from Microbeatlas

Aquatic Samples	380
Soil Samples	2401
Animal Samples	1244
Plant Samples	432
Total Samples	4457

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15690]	Pathogenicity (human)	yes, in single cases
[Ref.: #15690]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15690]	Thermoactinomycetaceae bacterium JFMB-ATE 16S rRNA gene, strain JFMB-ATE	FN665656	1607	ENA	714067 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kroppenstedtia eburnea DSM 45196	GCA_013282215	complete	GenBank	714067 tax ID	*
[Ref.: #66792]	Kroppenstedtia eburnea DSM 45196	GCA_900156615	contig	GenBank	714067 tax ID	*
[Ref.: #66792]	Kroppenstedtia eburnea strain DSM 45196	714067.7	complete	PATRIC	714067 tax ID	*
[Ref.: #66792]	Kroppenstedtia eburnea strain DSM 45196	714067.3	wgs	PATRIC	714067 tax ID	*
[Ref.: #66792]	Kroppenstedtia eburnea DSM 45196	2681813512	draft	JGI IMG/M	714067 tax ID	*

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GC-content

54.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Kroppenstedtia eburnea DSM 45196 NCBI: GCA_013282215.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kroppenstedtia eburnea DSM 45196 NCBI: GCA_013282215.1
[Ref.: #69480]	motile	no	81.753	no
[Ref.: #69480]	flagellated	no	91.307	no
[Ref.: #69480]	gram-positive	yes	91.814	no
[Ref.: #69480]	anaerobic	no	99.044	no
[Ref.: #69480]	aerobic	yes	95.217	no
[Ref.: #69480]	halophile	no	76.806	no
[Ref.: #69480]	spore-forming	yes	93.859	no
[Ref.: #69480]	glucose-util	yes	90.581	no
[Ref.: #69480]	thermophile	yes	97.899	no
[Ref.: #69480]	glucose-ferment	no	93.978	no

Availability in culture collections External links

[Ref.: #15690]

Culture collection no.

DSM 45196, CCUG 59226, NRRL B-24804

[Ref.: #85803]

SI-ID 406820

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Paludifilum halophilum gen. nov., sp. nov., a thermoactinomycete isolated from superficial sediment of a solar saltern.	Frikha-Dammak D, Fardeau ML, Cayol JL, Ben Fguira-Fourati L, Najeh S, Ollivier B, Maalej S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001523	2016	*
Phylogeny	Kroppenstedtia pulmonis sp. nov. and Kroppenstedtia sanguinis sp. nov., isolated from human patients.	Bell ME, Lasker BA, Klenk HP, Hoyles L, Sproer C, Schumann P, Brown JM	Antonie Van Leeuwenhoek	10.1007/s10482-016-0663-z	2016	*
Phylogeny	Kroppenstedtia guangzhouensis sp. nov., a thermoactinomycete isolated from soil.	Yang G, Qin D, Wu C, Yuan Y, Zhou S, Cai Y	Int J Syst Evol Microbiol	10.1099/ijs.0.051011-0	2013	*
Phylogeny	Kroppenstedtia eburnea gen. nov., sp. nov., a thermoactinomycete isolated by environmental screening, and emended description of the family Thermoactinomycetaceae Matsuo et al. 2006 emend. Yassin et al. 2009.	von Jan M, Riegger N, Potter G, Schumann P, Verbarg S, Sproer C, Rohde M, Lauer B, Labeda DP, Klenk HP	Int J Syst Evol Microbiol	10.1099/ijs.0.026179-0	2010	*
	Complete and Circularized Genome Assemblies of the Kroppenstedtia eburnea Genus Type Strain and the Kroppenstedtia pulmonis Species Type Strain with MiSeq and MinION Sequence Data.	Gulvik CA, Batra D, Rowe LA, Sheth M, Humrighouse BW, Howard DT, Lee J, McQuiston JR, Lasker BA	Microbiol Resour Announc	10.1128/MRA.00650-20	2020	*

References

#15690

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45196

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#61875 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59226

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85803

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406820.1 )

* These data were automatically processed and therefore are not curated

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Kroppenstedtia eburnea DSM 45196

Kroppenstedtia eburnea DSM 45196

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