Name: Aquirufa beregesia 50C-KIRBA
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 167134

Type strain:

Species: Aquirufa beregesia

Strain Designation: 50C-KIRBA

Culture col. no.: CIP 111736, LMG 31501, DSM 108552

Strain history: CIP <- 2019, M. Hahn, Innsbruck Univ., Mondsee, Austria: strain 50C-KIRBA

NCBI tax ID(s): 2516556 (species)

SI-ID 402068

DSM 108552, CIP 111736

Section

Aquirufa beregesia 50C-KIRBA is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from Environment, Freshwater.

Gram-negative
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cytophagaceae*
	Genus	*Aquirufa*
	Species	**Aquirufa beregesia**
	Full Scientific Name (LPSN)	Aquirufa beregesia Pitt et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #116788]	Gram stain	negative

[Ref.: #116788]	Cell shape	rod-shaped

[Ref.: #116788]	Motility	no

Multimedia content

[Ref.: #68583]

Caption:

Micrograph of DSM 108552. Scale bar represents 2 um.

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Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

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Culture medium

R2A MEDIUM (DSMZ Medium 830)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

CIP Medium 566

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #68583]			growth	25 °C

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Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #116788]	Sample type/isolated from	Environment, Freshwater
[Ref.: #116788]	Geographic location (country and/or sea, region)	Salzburg
[Ref.: #116788]	Country	Austria
[Ref.: #116788]	Country ISO 3 Code	AUT
[Ref.: #116788]	Continent	Europe
[Ref.: #116788]	Isolation date	2018-04-17
* marker position based on {}

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Global distribution of 16S sequence MK449346 (>99% sequence identity) for Aquirufa nivalisilvae subclade from Microbeatlas

Aquatic Samples	3247
Soil Samples	147
Animal Samples	326
Plant Samples	6
Total Samples	3726

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20215]	Aquirufa beregesia strain 50C-KIRBA 16S ribosomal RNA gene, partial sequence	MK449346	1386	ENA	2516556 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aquirufa beregesia 50C-KIRBA	GCA_011090385	scaffold	GenBank	2516556 tax ID	*

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GC-content

38.5 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aquirufa beregesia 50C-KIRBA NCBI: GCA_011090385.1
[Ref.: #69480]	motile	no	95.52	no
[Ref.: #69480]	flagellated	no	98.544	no
[Ref.: #69480]	gram-positive	no	97.263	no
[Ref.: #69480]	anaerobic	no	99.245	no
[Ref.: #69480]	aerobic	yes	88.808	no
[Ref.: #69480]	halophile	no	95.056	no
[Ref.: #69480]	spore-forming	no	96.031	no
[Ref.: #69480]	thermophile	no	97.916	yes
[Ref.: #69480]	glucose-util	yes	83.147	no
[Ref.: #69480]	glucose-ferment	no	88.838	no

Availability in culture collections External links

[Ref.: #20215]

Culture collection no.

CIP 111736, LMG 31501, DSM 108552

[Ref.: #114898]

SI-ID 402068

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aquirufa ecclesiirivi sp. nov. and Aquirufa beregesia sp. nov., isolated from a small creek and classification of Allopseudarcicella aquatilis as a later heterotypic synonym of Aquirufa nivalisilvae.	Pitt A, Koll U, Schmidt J, Hahn MW	Int J Syst Evol Microbiol	10.1099/ijsem.0.004319	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68583

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108552

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#114898

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402068.1 )

#116788 Collection of Institut Pasteur ; Curators of the CIP; CIP 111736
* These data were automatically processed and therefore are not curated

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