General

@ref: 20215

BacDive-ID: 167134

DSM-Number: 108552

keywords: 16S sequence, Bacteria, mesophilic

description: Aquirufa beregesia 50C-KIRBA is a mesophilic bacterium of the family Cytophagaceae.

NCBI tax id

• NCBI tax id: 2516556
• Matching level: species

strain history: <- M. Hahn, Inst. Microbiology, Univ. Innsbruck, Austria; 50C-KIRBA <- J. Schmidt

doi: 10.13145/bacdive167134.20221219.7.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/bacteroidota
• domain: Bacteria
• phylum: Bacteroidota
• class: Cytophagia
• order: Cytophagales
• family: Cytophagaceae
• genus: Aquirufa
• species: Aquirufa beregesia
• full scientific name: Aquirufa beregesia Pitt et al. 2020

@ref: 20215

domain: Bacteria

phylum: Bacteroidota

class: Cytophagia

order: Cytophagales

family: Cytophagaceae

genus: Aquirufa

species: Aquirufa beregesia

full scientific name: Aquirufa beregesia Pitt et al. 2020

strain designation: 50C-KIRBA

type strain: yes

Morphology

multimedia

• @ref: 68583
• multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_108552.jpg
• caption: Micrograph of DSM 108552. Scale bar represents 2 um.
• intellectual property rights: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Culture and growth conditions

culture medium

• @ref: 68583
• name: R2A MEDIUM (DSMZ Medium 830)
• growth: yes
• link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf

culture temp

• @ref: 68583
• growth: positive
• type: growth
• temperature: 25
• range: mesophilic

Isolation, sampling and environmental information

taxonmaps

• @ref: 69479
• File name: preview.99_62116.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_200;96_6432;97_7708;98_44045;99_62116&stattab=map
• Last taxonomy: Aquirufa nivalisilvae subclade
• 16S sequence: MK449346
• Sequence Identity:
• Total samples: 3726
• soil counts: 147
• aquatic counts: 3247
• animal counts: 326
• plant counts: 6

Sequence information

16S sequences

• @ref: 20215
• description: Aquirufa beregesia strain 50C-KIRBA 16S ribosomal RNA gene, partial sequence
• accession: MK449346
• length: 1386
• database: ena
• NCBI tax ID: 2516556

Genome sequences

• @ref: 66792
• description: Aquirufa beregesia 50C-KIRBA
• accession: GCA_011090385
• assembly level: scaffold
• database: ncbi
• NCBI tax ID: 2516556

GC content

• @ref: 68583
• GC-content: 38.5
• method: sequence analysis

External links

@ref: 20215

culture collection no.: CIP 111736, LMG 31501, DSM 108552

literature

• topic: Phylogeny
• Pubmed-ID: 32658638
• title: Aquirufa ecclesiirivi sp. nov. and Aquirufa beregesia sp. nov., isolated from a small creek and classification of Allopseudarcicella aquatilis as a later heterotypic synonym of Aquirufa nivalisilvae.
• authors: Pitt A, Koll U, Schmidt J, Hahn MW
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijsem.0.004319
• year: 2020
• mesh: Austria, Bacterial Typing Techniques, Base Composition, Cytophagaceae/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
• topic2: Transcriptome

Reference