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Strain identifier

BacDive ID: 167134

Type strain: Yes

Species: Aquirufa beregesia

Strain Designation: 50C-KIRBA

Strain history: <- M. Hahn, Inst. Microbiology, Univ. Innsbruck, Austria; 50C-KIRBA <- J. Schmidt

NCBI tax ID(s): 2516556 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 7.1 (current version):
version 7:
version 7.1 (current version)

General

@ref: 20215

BacDive-ID: 167134

DSM-Number: 108552

keywords: 16S sequence, Bacteria, mesophilic

description: Aquirufa beregesia 50C-KIRBA is a mesophilic bacterium of the family Cytophagaceae.

NCBI tax id

  • NCBI tax id: 2516556
  • Matching level: species

strain history: <- M. Hahn, Inst. Microbiology, Univ. Innsbruck, Austria; 50C-KIRBA <- J. Schmidt

doi: 10.13145/bacdive167134.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Cytophagaceae
  • genus: Aquirufa
  • species: Aquirufa beregesia
  • full scientific name: Aquirufa beregesia Pitt et al. 2020

@ref: 20215

domain: Bacteria

phylum: Bacteroidota

class: Cytophagia

order: Cytophagales

family: Cytophagaceae

genus: Aquirufa

species: Aquirufa beregesia

full scientific name: Aquirufa beregesia Pitt et al. 2020

strain designation: 50C-KIRBA

type strain: yes

Morphology

multimedia

  • @ref: 68583
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_108552.jpg
  • caption: Micrograph of DSM 108552. Scale bar represents 2 um.
  • intellectual property rights: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Culture and growth conditions

culture medium

  • @ref: 68583
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf

culture temp

  • @ref: 68583
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_62116.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_200;96_6432;97_7708;98_44045;99_62116&stattab=map
  • Last taxonomy: Aquirufa nivalisilvae subclade
  • 16S sequence: MK449346
  • Sequence Identity:
  • Total samples: 3726
  • soil counts: 147
  • aquatic counts: 3247
  • animal counts: 326
  • plant counts: 6

Sequence information

16S sequences

  • @ref: 20215
  • description: Aquirufa beregesia strain 50C-KIRBA 16S ribosomal RNA gene, partial sequence
  • accession: MK449346
  • length: 1386
  • database: ena
  • NCBI tax ID: 2516556

Genome sequences

  • @ref: 66792
  • description: Aquirufa beregesia 50C-KIRBA
  • accession: GCA_011090385
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 2516556

GC content

  • @ref: 68583
  • GC-content: 38.5
  • method: sequence analysis

External links

@ref: 20215

culture collection no.: CIP 111736, LMG 31501, DSM 108552

literature

  • topic: Phylogeny
  • Pubmed-ID: 32658638
  • title: Aquirufa ecclesiirivi sp. nov. and Aquirufa beregesia sp. nov., isolated from a small creek and classification of Allopseudarcicella aquatilis as a later heterotypic synonym of Aquirufa nivalisilvae.
  • authors: Pitt A, Koll U, Schmidt J, Hahn MW
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.004319
  • year: 2020
  • mesh: Austria, Bacterial Typing Techniques, Base Composition, Cytophagaceae/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68583Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-108552Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108552)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/