Name: Desulforhabdus amnigena ASRB1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16675

Type strain:

Species: Desulforhabdus amnigena

Strain Designation: ASRB1

Culture col. no.: DSM 10338

Strain history: <- S. J. W. H. Oude Elferink; ASRB1 <- S. J. W. H. Oude Elferink {1992}

NCBI tax ID(s): 40218 (species)

SI-ID 45333

ATCC 51979, DSM 10338

Section

Desulforhabdus amnigena ASRB1 is an anaerobe, mesophilic bacterium that was isolated from sludge, UASB reactor.

anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Syntrophobacterales*
	Family	*Syntrophobacteraceae*
	Genus	*Desulforhabdus*
	Species	**Desulforhabdus amnigena**
	Full Scientific Name (LPSN)	Desulforhabdus amnigena corrig. Oude Elferink et al. 1997

Synonym

Desulforhabdus amnigenus

Information on morphological and physiological properties Morphology

[Ref.: #3911]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3911]

Culture medium

DESULFORHABDUS AMNIGENUS MEDIUM (DSMZ Medium 708)

[Ref.: #3911]

Culture medium growth

[Ref.: #3911]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3911]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3911]			growth	37 °C

[Ref.: #3911]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3911]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3911]	Sample type/isolated from	sludge, UASB reactor
[Ref.: #3911]	Country	Netherlands
[Ref.: #3911]	Country ISO 3 Code	NLD
[Ref.: #3911]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Anaerobic digestor
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X83274 (>99% sequence identity) for Desulforhabdus amnigena subclade from Microbeatlas

Aquatic Samples	221
Soil Samples	42
Animal Samples	28
Plant Samples	15
Total Samples	306

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3911]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3911]	D.amnigenus 16S rRNA gene	X83274	1518	ENA	40218 tax ID

[Ref.: #3911]

GC-content

52.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #3911]

Culture collection no.

DSM 10338

[Ref.: #85695]

SI-ID 45333

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfovirga adipica gen. nov., sp. nov., an adipate-degrading, gram-negative, sulfate-reducing bacterium.	Tanaka K, Stackebrandt E, Tohyama S, Eguchi T	Int J Syst Evol Microbiol	10.1099/00207713-50-2-639	2000	*
Phylogeny	Desulforhabdus amnigenus gen. nov. sp. nov., a sulfate reducer isolated from anaerobic granular sludge.	Oude Elferink SJ, Maas RN, Harmsen HJ, Stams AJ	Arch Microbiol		1995	*
Phylogeny	Desulfoferrobacter suflitae gen. nov., sp. nov., a novel sulphate-reducing bacterium in the Deltaproteobacteria capable of autotrophic growth with hydrogen or elemental iron.	Davidova IA, Duncan KE, Wiley G, Najar FZ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005483	2022	*

References

#3911

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10338

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#85695

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45333.1 )

* These data were automatically processed and therefore are not curated

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