Name: Ruminococcus flavefaciens ATCC 19208
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166624

Type strain:

Species: Ruminococcus flavefaciens

Culture col. no.: ATCC 19208

NCBI tax ID(s): 1336236 (strain), 1265 (species)

SI-ID 36900

ATCC 19208, NCDO 2213

Other strains from Ruminococcus flavefaciens

R. flavefaciens 17, DSM 25089
R. flavefaciens FD-1,

Ruminococcus flavefaciens ATCC 19208 is a bacterium of the family Oscillospiraceae.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Ruminococcus*
	Species	**Ruminococcus flavefaciens**
	Full Scientific Name (LPSN)	Ruminococcus flavefaciens Sijpesteijn 1948 (Approved Lists 1980)

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20215]

Biosafety level

Risk group

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20215]	Ruminococcus flavefaciens strain ATCC 19208 16S ribosomal RNA gene, partial sequence	KP689131	1388	ENA	1265 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Ruminococcus flavefaciens ATCC 19208	GCA_000518765	scaffold	GenBank	1336236 tax ID	*
[Ref.: #66792]	Ruminococcus flavefaciens ATCC 19208	1336236.3	wgs	PATRIC	1336236 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ruminococcus flavefaciens ATCC 19208 ATCC 19208 NCBI: GCA_000518765.1
[Ref.: #69480]	motile	no	90.315	no
[Ref.: #69480]	flagellated	no	95.086	no
[Ref.: #69480]	gram-positive	yes	88.186	no
[Ref.: #69480]	anaerobic	yes	99.735	no
[Ref.: #69480]	halophile	no	90.418	no
[Ref.: #69480]	spore-forming	no	66.285	no
[Ref.: #69480]	glucose-util	yes	80.142	no
[Ref.: #69480]	aerobic	no	98.354	no
[Ref.: #69480]	thermophile	no	76.269	no
[Ref.: #69480]	glucose-ferment	yes	65.939	no

Availability in culture collections External links

[Ref.: #20215]

Culture collection no.

ATCC 19208

[Ref.: #114820]

SI-ID 36900

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ruminococcus champanellensis sp. nov., a cellulose-degrading bacterium from human gut microbiota.	Chassard C, Delmas E, Robert C, Lawson PA, Bernalier-Donadille A	Int J Syst Evol Microbiol	10.1099/ijs.0.027375-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#114820

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36900.1 )

* These data were automatically processed and therefore are not curated

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Ruminococcus flavefaciens ATCC 19208 ATCC 19208

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