Ruminococcus flavefaciens (FD-1)

Name: Ruminococcus flavefaciens (FD-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140664

Type strain

Strain Designation FD-1

Culture col. no. FD-1

NCBI tax ID(s) 1265

Special Collections Literature strains

Ruminococcus flavefaciens FD-1 is a prokaryote of the family Oscillospiraceae.

genome sequence

Name and taxonomic classification

Culture Collection Numbers

FD-1

@ref 20215

Last LPSN update 2025-12-16 10:03:39

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Oscillospiraceae

Genus Ruminococcus

Species Ruminococcus flavefaciens

Full scientific name Ruminococcus flavefaciens Sijpesteijn 1948 (Approved Lists 1980)

BacDive ID	Other strains from **Ruminococcus flavefaciens** (2)	Type strain
166624	R. flavefaciens ATCC 19208 (type strain)
17683	R. flavefaciens 17, DSM 25089

Morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	anaerobe	93.926

Spore formation

@ref	Spore formation	Confidence
125439		93.9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43397	17057 ChEBI	cellobiose	+	degradation
43397	62968 ChEBI	cellulose	+	degradation

Enzymes

@ref	Value	Activity	Ec
43397	endo-1,3(4)-beta-glucanase	+	3.2.1.6

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	coenzyme A metabolism	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	cyanate degradation	100	3 of 3
66794	ethanol fermentation	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	glycogen metabolism	100	5 of 5
66794	L-lactaldehyde degradation	100	3 of 3
66794	starch degradation	90	9 of 10
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	palmitate biosynthesis	86.36	19 of 22
66794	NAD metabolism	83.33	15 of 18
66794	cellulose degradation	80	4 of 5
66794	photosynthesis	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	ppGpp biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	biotin biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	vitamin B12 metabolism	73.53	25 of 34
66794	flavin biosynthesis	73.33	11 of 15
66794	peptidoglycan biosynthesis	73.33	11 of 15
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	pyrimidine metabolism	71.11	32 of 45
66794	threonine metabolism	70	7 of 10
66794	phenylalanine metabolism	69.23	9 of 13
66794	acetoin degradation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	purine metabolism	65.96	62 of 94
66794	d-xylose degradation	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	gluconeogenesis	62.5	5 of 8
66794	methionine metabolism	61.54	16 of 26
66794	hydrogen production	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	lipid metabolism	58.06	18 of 31
66794	propanol degradation	57.14	4 of 7
66794	valine metabolism	55.56	5 of 9
66794	tryptophan metabolism	55.26	21 of 38
66794	non-pathway related	55.26	21 of 38
66794	histidine metabolism	55.17	16 of 29
66794	pentose phosphate pathway	54.55	6 of 11
66794	leucine metabolism	53.85	7 of 13
66794	glutamate and glutamine metabolism	53.57	15 of 28
66794	polyamine pathway	52.17	12 of 23
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	propionate fermentation	50	5 of 10
66794	sulfopterin metabolism	50	2 of 4
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	isoleucine metabolism	50	4 of 8
66794	degradation of pentoses	50	14 of 28
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	citric acid cycle	50	7 of 14
66794	butanoate fermentation	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	arginine metabolism	50	12 of 24
66794	cysteine metabolism	50	9 of 18
66794	alanine metabolism	48.28	14 of 29
66794	lysine metabolism	47.62	20 of 42
66794	proline metabolism	45.45	5 of 11
66794	degradation of hexoses	44.44	8 of 18
66794	oxidative phosphorylation	43.96	40 of 91
66794	glutathione metabolism	42.86	6 of 14
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	Entner Doudoroff pathway	40	4 of 10
66794	myo-inositol biosynthesis	40	4 of 10
66794	glycine metabolism	40	4 of 10
66794	factor 420 biosynthesis	40	2 of 5
66794	methylglyoxal degradation	40	2 of 5
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	urea cycle	38.46	5 of 13
66794	isoprenoid biosynthesis	38.46	10 of 26
66794	vitamin B6 metabolism	36.36	4 of 11
66794	tyrosine metabolism	35.71	5 of 14
66794	phenol degradation	35	7 of 20
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	pantothenate biosynthesis	33.33	2 of 6
66794	octane oxidation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	ascorbate metabolism	31.82	7 of 22
66794	degradation of sugar alcohols	31.25	5 of 16
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	sulfate reduction	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	cholesterol biosynthesis	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	vitamin E metabolism	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	heme metabolism	21.43	3 of 14

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM17489v1 assembly for Ruminococcus flavefaciens FD-1	scaffold	GCA_000174895	641112.4	645951829	641112	23.19

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Ruminococcus flavefaciens FD-1
NCBI: GCA_000174895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	93.90	no
125439	motility	BacteriaNetⓘ	no	73.50	no
125439	gram_stain	BacteriaNetⓘ	variable	80.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	89.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Ruminococcus flavefaciens FD-1 FD-1
NCBI: GCA_000174895.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	71.41	no
125438	anaerobic	anaerobicⓘ	yes	93.93	no
125438	aerobic	aerobicⓘ	no	96.15	no
125438	spore-forming	spore-formingⓘ	no	60.81	no
125438	thermophilic	thermophileⓘ	no	87.32	no
125438	flagellated	motile2+ⓘ	no	78.17	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	In Vivo Competitions between Fibrobacter succinogenes, Ruminococcus flavefaciens, and Ruminoccus albus in a Gnotobiotic Sheep Model Revealed by Multi-Omic Analyses.	Yeoman CJ, Fields CJ, Lepercq P, Ruiz P, Forano E, White BA, Mosoni P	mBio	10.1128/mBio.03533-20	2021
Enzymology	Antimicrobial activity of Brazilian propolis extracts against rumen bacteria in vitro.	de Aguiar SC, Zeoula LM, Franco SL, Peres LP, Arcuri PB, Forano E	World J Microbiol Biotechnol	10.1007/s11274-013-1361-x	2013
	Assessment of biases associated with profiling simple, model communities using terminal-restriction fragment length polymorphism-based analyses.	Frey JC, Angert ER, Pell AN	J Microbiol Methods	10.1016/j.mimet.2006.02.011	2006
Metabolism	Albusin B, a bacteriocin from the ruminal bacterium Ruminococcus albus 7 that inhibits growth of Ruminococcus flavefaciens.	Chen J, Stevenson DM, Weimer PJ	Appl Environ Microbiol	10.1128/AEM.70.5.3167-3170.2004	2004
Phylogeny	Phylogenetic reconstruction of Gram-positive organisms based on comparative sequence analysis of molecular chaperones from the ruminal microorganism Ruminococcus flavefaciens FD-1.	Antonopoulos DA, Russell WM, White BA	FEMS Microbiol Lett	10.1016/S0378-1097(03)00597-4	2003
Enzymology	Characterization of the gene encoding glutamate dehydrogenase ( gdhA) from the ruminal bacterium Ruminococcus flavefaciens FD-1.	Antonopoulos DA, Aminov RI, Duncan PA, White BA, Mackie RI	Arch Microbiol	10.1007/s00203-002-0513-4	2003
Metabolism	Competition among three predominant ruminal cellulolytic bacteria in the absence or presence of non-cellulolytic bacteria.	Chen J, Weimer P	Microbiology (Reading)	10.1099/00221287-147-1-21	2001
Metabolism	Production of caproic acid by cocultures of ruminal cellulolytic bacteria and Clostridium kluyveri grown on cellulose and ethanol.	Kenealy WR, Cao Y, Weimer PJ	Appl Microbiol Biotechnol	10.1007/s002530050590	1995
Enzymology	Nucleotide sequence and transcriptional analysis of the celD beta-glucanase gene from Ruminococcus flavefaciens FD-1.	Vercoe PE, Spight DH, White BA	Can J Microbiol	10.1139/m95-004	1995
Enzymology	Purification and properties of NADP-dependent glutamate dehydrogenase from Ruminococcus flavefaciens FD-1.	Duncan PA, White BA, Mackie RI	Appl Environ Microbiol	10.1128/aem.58.12.4032-4037.1992	1992
Metabolism	Effect of phenolic monomers on ruminal bacteria.	Borneman WS, Akin DE, VanEseltine WP	Appl Environ Microbiol	10.1128/aem.52.6.1331-1339.1986	1986
Metabolism	Highly efficient, processive and multifunctional recombinant endoglucanase RfGH5_4 from Ruminococcus flavefaciens FD-1 v3 for recycling lignocellulosic plant biomasses.	Gavande PV, Nath P, Kumar K, Ahmed N, Fontes CMGA, Goyal A	Int J Biol Macromol	10.1016/j.ijbiomac.2022.04.059	2022
Enzymology	Molecular Cloning, Expression and Biochemical Characterization of a Family 5 Glycoside Hydrolase First Endo-Mannanase (RfGH5_7) from Ruminococcus flavefaciens FD-1 v3.	Goyal D, Kumar K, Centeno MSJ, Thakur A, Pires VMR, Bule P, Fontes CMGA, Goyal A	Mol Biotechnol	10.1007/s12033-019-00205-2	2019
Metabolism	Higher order scaffoldin assembly in Ruminococcus flavefaciens cellulosome is coordinated by a discrete cohesin-dockerin interaction.	Bule P, Pires VMR, Alves VD, Carvalho AL, Prates JAM, Ferreira LMA, Smith SP, Gilbert HJ, Noach I, Bayer EA, Najmudin S, Fontes CMGA	Sci Rep	10.1038/s41598-018-25171-8	2018
Metabolism	Complexity of the Ruminococcus flavefaciens FD-1 cellulosome reflects an expansion of family-related protein-protein interactions.	Israeli-Ruimy V, Bule P, Jindou S, Dassa B, Morais S, Borovok I, Barak Y, Slutzki M, Hamberg Y, Cardoso V, Alves VD, Najmudin S, White BA, Flint HJ, Gilbert HJ, Lamed R, Fontes CM, Bayer EA	Sci Rep	10.1038/srep42355	2017
Metabolism	Structural Characterization and Bioactivity Analysis of the Two-Component Lantibiotic Flv System from a Ruminant Bacterium.	Zhao X, van der Donk WA	Cell Chem Biol	10.1016/j.chembiol.2015.11.014	2016
Enzymology	Purification and crystallographic studies of a putative carbohydrate-binding module from the Ruminococcus flavefaciens FD-1 endoglucanase Cel5A.	Pires AJ, Ribeiro T, Thompson A, Venditto I, Fernandes VO, Bule P, Santos H, Alves VD, Pires V, Ferreira LM, Fontes CM, Najmudin S	Acta Crystallogr F Struct Biol Commun	10.1107/S2053230X15009784	2015
Genetics	Crystallization and preliminary crystallographic studies of a novel noncatalytic carbohydrate-binding module from the Ruminococcus flavefaciens cellulosome.	Venditto I, Goyal A, Thompson A, Ferreira LM, Fontes CM, Najmudin S	Acta Crystallogr F Struct Biol Commun	10.1107/S2053230X14025576	2015
Enzymology	Expression, purification and crystallization of a novel carbohydrate-binding module from the Ruminococcus flavefaciens cellulosome.	Venditto I, Centeno MS, Ferreira LM, Fontes CM, Najmudin S	Acta Crystallogr F Struct Biol Commun	10.1107/S2053230X14024248	2014
Enzymology	Overexpression, crystallization and preliminary X-ray characterization of Ruminococcus flavefaciens scaffoldin C cohesin in complex with a dockerin from an uncharacterized CBM-containing protein.	Bule P, Ruimy-Israeli V, Cardoso V, Bayer EA, Fontes CM, Najmudin S	Acta Crystallogr F Struct Biol Commun	10.1107/S2053230X14012667	2014
Metabolism	Rumen cellulosomics: divergent fiber-degrading strategies revealed by comparative genome-wide analysis of six ruminococcal strains.	Dassa B, Borovok I, Ruimy-Israeli V, Lamed R, Flint HJ, Duncan SH, Henrissat B, Coutinho P, Morrison M, Mosoni P, Yeoman CJ, White BA, Bayer EA	PLoS One	10.1371/journal.pone.0099221	2014
Metabolism	Expression patterns of Ruminococcus flavefaciens 007S cellulases as revealed by zymogram approach.	Vodovnik M, Marinsek Logar R	Folia Microbiol (Praha)	10.1007/s12223-012-0144-3	2012
Metabolism	Kinetic characterization of a glycoside hydrolase family 44 xyloglucanase/endoglucanase from Ruminococcus flavefaciens FD-1.	Warner CD, Go RM, Garcia-Salinas C, Ford C, Reilly PJ	Enzyme Microb Technol	10.1016/j.enzmictec.2010.08.009	2010
Phylogeny	Development of a signature probe targeting the 16S-23S rRNA internal transcribed spacer of a ruminal Ruminococcus flavefaciens isolate from reindeer.	Praesteng KE, Mackie RI, Cann IK, Mathiesen SD, Sundset MA	Benef Microbes	10.3920/BM2010.0044	2011
Metabolism	Abundance and diversity of dockerin-containing proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1.	Rincon MT, Dassa B, Flint HJ, Travis AJ, Jindou S, Borovok I, Lamed R, Bayer EA, Henrissat B, Coutinho PM, Antonopoulos DA, Berg Miller ME, White BA	PLoS One	10.1371/journal.pone.0012476	2010
Genetics	Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1.	Berg Miller ME, Antonopoulos DA, Rincon MT, Band M, Bari A, Akraiko T, Hernandez A, Thimmapuram J, Henrissat B, Coutinho PM, Borovok I, Jindou S, Lamed R, Flint HJ, Bayer EA, White BA	PLoS One	10.1371/journal.pone.0006650	2009
Phylogeny	Cellulosome gene cluster analysis for gauging the diversity of the ruminal cellulolytic bacterium Ruminococcus flavefaciens.	Jindou S, Brulc JM, Levy-Assaraf M, Rincon MT, Flint HJ, Berg ME, Wilson MK, White BA, Bayer EA, Lamed R, Borovok I	FEMS Microbiol Lett	10.1111/j.1574-6968.2008.01234.x	2008
Metabolism	Conservation and divergence in cellulosome architecture between two strains of Ruminococcus flavefaciens.	Jindou S, Borovok I, Rincon MT, Flint HJ, Antonopoulos DA, Berg ME, White BA, Bayer EA, Lamed R	J Bacteriol	10.1128/JB.00973-06	2006
Genetics	Strain-specific genomic regions of Ruminococcus flavefaciens FD-1 as revealed by combinatorial random-phase genome sequencing and suppressive subtractive hybridization.	Antonopoulos DA, Nelson KE, Morrison M, White BA	Environ Microbiol	10.1111/j.1462-2920.2004.00576.x	2004
Metabolism	Solid residues from Ruminococcus cellulose fermentations as components of wood adhesive formulations.	Weimer PJ, Conner AH, Lorenz LF	Appl Microbiol Biotechnol	10.1007/s00253-003-1334-3	2003
Metabolism	Differential protein phosphorylation-dephosphorylation in response to carbon source in Ruminococcus flavefaciens FD-1.	Vercoe PE, Kocherginskaya SA, White BA	J Appl Microbiol	10.1046/j.1365-2672.2003.01929.x	2003
Metabolism	Production of succinate from glucose, cellobiose, and various cellulosic materials by the ruminal anaerobic bacteria Fibrobacter succinogenes and Ruminococcus flavefaciens.	Gokarn RR, Eiteman MA, Martin SA, Eriksson KE	Appl Biochem Biotechnol	10.1007/BF02785981	1997
Metabolism	Formation of formate and hydrogen, and flux of reducing equivalents and carbon in Ruminococcus flavefaciens FD-1.	Shi Y, Weimer PJ, Ralph J	Antonie Van Leeuwenhoek	10.1023/a:1000256221938	1997
Metabolism	Competition for cellobiose among three predominant ruminal cellulolytic bacteria under substrate-excess and substrate-limited conditions.	Shi Y, Weimer PJ	Appl Environ Microbiol	10.1128/aem.63.2.743-748.1997	1997
Phylogeny	Competition for cellulose among three predominant ruminal cellulolytic bacteria under substrate-excess and substrate-limited conditions.	Shi Y, Odt CL, Weimer PJ	Appl Environ Microbiol	10.1128/aem.63.2.734-742.1997	1997
Metabolism	Utilization of individual cellodextrins by three predominant ruminal cellulolytic bacteria.	Shi Y, Weimer PJ	Appl Environ Microbiol	10.1128/aem.62.3.1084-1088.1996	1996
Genetics	DNA sequence and transcriptional characterization of a beta-glucanase gene (celB) from Ruminococcus flavefaciens FD-1.	Vercoe PE, Finks JL, White BA	Can J Microbiol	10.1139/m95-120	1995
Metabolism	The use of 16S rRNA-targeted oligonucleotide probes to study competition between ruminal fibrolytic bacteria: pure-culture studies with cellulose and alkaline peroxide-treated wheat straw.	Odenyo AA, Mackie RI, Stahl DA, White BA	Appl Environ Microbiol	10.1128/aem.60.10.3697-3703.1994	1994
Phylogeny	The use of 16S rRNA-targeted oligonucleotide probes to study competition between ruminal fibrolytic bacteria: development of probes for Ruminococcus species and evidence for bacteriocin production.	Odenyo AA, Mackie RI, Stahl DA, White BA	Appl Environ Microbiol	10.1128/aem.60.10.3688-3696.1994	1994
Metabolism	The restriction endonuclease RflFII, isolated from Ruminococcus flavefaciens FD-1, recognizes the sequence 5'-AGTACT-3', and is inhibited by site-specific adenine methylation.	Morrison M, Mackie RI, White BA	FEMS Microbiol Lett	10.1111/j.1574-6968.1994.tb07162.x	1994
Genetics	Transcriptional regulation of an endoglucanase and a cellodextrinase gene in Ruminococcus flavefaciens FD-1.	Wang W, Reid SJ, Thomson JA	J Gen Microbiol	10.1099/00221287-139-6-1219	1993
Metabolism	Inhibition of ruminal cellulose fermentation by extracts of the perennial legume cicer milkvetch (Astragalus cicer).	Weimer PJ, Hatfield RD, Buxton DR	Appl Environ Microbiol	10.1128/aem.59.2.405-409.1993	1993
Metabolism	Response surface analysis of the effects of pH and dilution rate on Ruminococcus flavefaciens FD-1 in cellulose-fed continuous culture.	Shi Y, Weimer PJ	Appl Environ Microbiol	10.1128/aem.58.8.2583-2591.1992	1992
Metabolism	Partial characterization of a DNA restriction endonuclease from Ruminococcus flavefaciens FD-1 and its inhibition by site-specific adenine methylation.	Morrison M, Mackie RI, White BA	Appl Environ Microbiol	10.1128/aem.58.1.66-69.1992	1992
	Differential fermentation of cellulose allomorphs by ruminal cellulolytic bacteria.	Weimer PJ, French AD, Calamari TA	Appl Environ Microbiol	10.1128/aem.57.11.3101-3106.1991	1991
Metabolism	Degradation of wheat straw and alkaline hydrogen peroxide-treated wheat straw by Ruminococcus albus 8 and Ruminococcus flavefaciens FD-1.	Odenyo AA, Mackie RI, Fahey GC Jr, White BA	J Anim Sci	10.2527/1991.692819x	1991
Metabolism	Cellobiose uptake and metabolism by Ruminococcus flavefaciens.	Helaszek CT, White BA	Appl Environ Microbiol	10.1128/aem.57.1.64-68.1991	1991
Enzymology	Nucleotide sequence of the celA gene encoding a cellodextrinase of Ruminococcus flavefaciens FD-1.	Wang WY, Thomson JA	Mol Gen Genet	10.1007/BF00633827	1990
Enzymology	Assessment of the endo-1,4-beta-glucanase components of Ruminococcus flavefaciens FD-1.	Doerner KC, White BA	Appl Environ Microbiol	10.1128/aem.56.6.1844-1850.1990	1990
Pathogenicity	Analysis of antibiotic susceptibility and extrachromosomal DNA content of Ruminococcus albus and Ruminococcus flavefaciens.	Champion KM, Helaszek CT, White BA	Can J Microbiol	10.1139/m88-196	1988
Enzymology	Methylcellulose inhibition of exo-beta-1,4-glucanase A from Ruminococcus flavefaciens FD-1.	White BA, Rasmussen MA, Gardner RM	Appl Environ Microbiol	10.1128/aem.54.6.1634-1636.1988	1988
	Effects of Cellulolytic Ruminal Bacteria and of Cell Extracts on Germination of Euonymus americanus L. Seeds.	Howard GT, Elliott LP	Appl Environ Microbiol	10.1128/aem.54.1.218-224.1988	1988
Enzymology	Purification and characterization of an exo-beta-1,4-glucanase from Ruminococcus flavefaciens FD-1.	Gardner RM, Doerner KC, White BA	J Bacteriol	10.1128/jb.169.10.4581-4588.1987	1987

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43397	Kinchel C. Doerner , Gary T. Howard, Roderick I. Mackie and Bryan A. White: beta-Glucanase expression by Ruminococcus flavefaciens FD-1. FEMS Microbiol. Lett. ( DOI 10.1111/j.1574-6968.1992.tb05081.x )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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Ruminococcus flavefaciens (FD-1)

Name and taxonomic classification

Culture Collection Numbers

Morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000174895

Genome-based predictions

Predictions

Literature

Literature

References

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