Genetics |
In Vivo Competitions between Fibrobacter succinogenes, Ruminococcus flavefaciens, and Ruminoccus albus in a Gnotobiotic Sheep Model Revealed by Multi-Omic Analyses. |
Yeoman CJ, Fields CJ, Lepercq P, Ruiz P, Forano E, White BA, Mosoni P |
mBio |
10.1128/mBio.03533-20 |
2021 |
* |
Enzymology |
Antimicrobial activity of Brazilian propolis extracts against rumen bacteria in vitro. |
de Aguiar SC, Zeoula LM, Franco SL, Peres LP, Arcuri PB, Forano E |
World J Microbiol Biotechnol |
10.1007/s11274-013-1361-x |
2013 |
* |
Metabolism |
Albusin B, a bacteriocin from the ruminal bacterium Ruminococcus albus 7 that inhibits growth of Ruminococcus flavefaciens. |
Chen J, Stevenson DM, Weimer PJ |
Appl Environ Microbiol |
10.1128/AEM.70.5.3167-3170.2004 |
2004 |
* |
Phylogeny |
Phylogenetic reconstruction of Gram-positive organisms based on comparative sequence analysis of molecular chaperones from the ruminal microorganism Ruminococcus flavefaciens FD-1. |
Antonopoulos DA, Russell WM, White BA |
FEMS Microbiol Lett |
10.1016/S0378-1097(03)00597-4 |
2003 |
* |
Enzymology |
Characterization of the gene encoding glutamate dehydrogenase ( gdhA) from the ruminal bacterium Ruminococcus flavefaciens FD-1. |
Antonopoulos DA, Aminov RI, Duncan PA, White BA, Mackie RI |
Arch Microbiol |
10.1007/s00203-002-0513-4 |
2003 |
* |
Metabolism |
Competition among three predominant ruminal cellulolytic bacteria in the absence or presence of non-cellulolytic bacteria. |
Chen J, Weimer P |
Microbiology (Reading) |
10.1099/00221287-147-1-21 |
2001 |
* |
Metabolism |
Production of caproic acid by cocultures of ruminal cellulolytic bacteria and Clostridium kluyveri grown on cellulose and ethanol. |
Kenealy WR, Cao Y, Weimer PJ |
Appl Microbiol Biotechnol |
10.1007/s002530050590 |
1995 |
* |
Enzymology |
Nucleotide sequence and transcriptional analysis of the celD beta-glucanase gene from Ruminococcus flavefaciens FD-1. |
Vercoe PE, Spight DH, White BA |
Can J Microbiol |
10.1139/m95-004 |
1995 |
* |
Enzymology |
Purification and properties of NADP-dependent glutamate dehydrogenase from Ruminococcus flavefaciens FD-1. |
Duncan PA, White BA, Mackie RI |
Appl Environ Microbiol |
10.1128/aem.58.12.4032-4037.1992 |
1992 |
* |
Metabolism |
Effect of phenolic monomers on ruminal bacteria. |
Borneman WS, Akin DE, VanEseltine WP |
Appl Environ Microbiol |
10.1128/aem.52.6.1331-1339.1986 |
1986 |
* |
Metabolism |
Highly efficient, processive and multifunctional recombinant endoglucanase RfGH5_4 from Ruminococcus flavefaciens FD-1 v3 for recycling lignocellulosic plant biomasses. |
Gavande PV, Nath P, Kumar K, Ahmed N, Fontes CMGA, Goyal A |
Int J Biol Macromol |
10.1016/j.ijbiomac.2022.04.059 |
2022 |
* |
Enzymology |
Molecular Cloning, Expression and Biochemical Characterization of a Family 5 Glycoside Hydrolase First Endo-Mannanase (RfGH5_7) from Ruminococcus flavefaciens FD-1 v3. |
Goyal D, Kumar K, Centeno MSJ, Thakur A, Pires VMR, Bule P, Fontes CMGA, Goyal A |
Mol Biotechnol |
10.1007/s12033-019-00205-2 |
2019 |
* |
Metabolism |
Higher order scaffoldin assembly in Ruminococcus flavefaciens cellulosome is coordinated by a discrete cohesin-dockerin interaction. |
Bule P, Pires VMR, Alves VD, Carvalho AL, Prates JAM, Ferreira LMA, Smith SP, Gilbert HJ, Noach I, Bayer EA, Najmudin S, Fontes CMGA |
Sci Rep |
10.1038/s41598-018-25171-8 |
2018 |
* |
Metabolism |
Complexity of the Ruminococcus flavefaciens FD-1 cellulosome reflects an expansion of family-related protein-protein interactions. |
Israeli-Ruimy V, Bule P, Jindou S, Dassa B, Morais S, Borovok I, Barak Y, Slutzki M, Hamberg Y, Cardoso V, Alves VD, Najmudin S, White BA, Flint HJ, Gilbert HJ, Lamed R, Fontes CM, Bayer EA |
Sci Rep |
10.1038/srep42355 |
2017 |
* |
Metabolism |
Structural Characterization and Bioactivity Analysis of the Two-Component Lantibiotic Flv System from a Ruminant Bacterium. |
Zhao X, van der Donk WA |
Cell Chem Biol |
10.1016/j.chembiol.2015.11.014 |
2016 |
* |
Enzymology |
Purification and crystallographic studies of a putative carbohydrate-binding module from the Ruminococcus flavefaciens FD-1 endoglucanase Cel5A. |
Pires AJ, Ribeiro T, Thompson A, Venditto I, Fernandes VO, Bule P, Santos H, Alves VD, Pires V, Ferreira LM, Fontes CM, Najmudin S |
Acta Crystallogr F Struct Biol Commun |
10.1107/S2053230X15009784 |
2015 |
* |
Genetics |
Crystallization and preliminary crystallographic studies of a novel noncatalytic carbohydrate-binding module from the Ruminococcus flavefaciens cellulosome. |
Venditto I, Goyal A, Thompson A, Ferreira LM, Fontes CM, Najmudin S |
Acta Crystallogr F Struct Biol Commun |
10.1107/S2053230X14025576 |
2015 |
* |
Enzymology |
Expression, purification and crystallization of a novel carbohydrate-binding module from the Ruminococcus flavefaciens cellulosome. |
Venditto I, Centeno MS, Ferreira LM, Fontes CM, Najmudin S |
Acta Crystallogr F Struct Biol Commun |
10.1107/S2053230X14024248 |
2014 |
* |
Enzymology |
Overexpression, crystallization and preliminary X-ray characterization of Ruminococcus flavefaciens scaffoldin C cohesin in complex with a dockerin from an uncharacterized CBM-containing protein. |
Bule P, Ruimy-Israeli V, Cardoso V, Bayer EA, Fontes CM, Najmudin S |
Acta Crystallogr F Struct Biol Commun |
10.1107/S2053230X14012667 |
2014 |
* |
Metabolism |
Rumen cellulosomics: divergent fiber-degrading strategies revealed by comparative genome-wide analysis of six ruminococcal strains. |
Dassa B, Borovok I, Ruimy-Israeli V, Lamed R, Flint HJ, Duncan SH, Henrissat B, Coutinho P, Morrison M, Mosoni P, Yeoman CJ, White BA, Bayer EA |
PLoS One |
10.1371/journal.pone.0099221 |
2014 |
* |
Metabolism |
Expression patterns of Ruminococcus flavefaciens 007S cellulases as revealed by zymogram approach. |
Vodovnik M, Marinsek Logar R |
Folia Microbiol (Praha) |
10.1007/s12223-012-0144-3 |
2012 |
* |
Metabolism |
Kinetic characterization of a glycoside hydrolase family 44 xyloglucanase/endoglucanase from Ruminococcus flavefaciens FD-1. |
Warner CD, Go RM, Garcia-Salinas C, Ford C, Reilly PJ |
Enzyme Microb Technol |
10.1016/j.enzmictec.2010.08.009 |
2010 |
* |
Phylogeny |
Development of a signature probe targeting the 16S-23S rRNA internal transcribed spacer of a ruminal Ruminococcus flavefaciens isolate from reindeer. |
Praesteng KE, Mackie RI, Cann IK, Mathiesen SD, Sundset MA |
Benef Microbes |
10.3920/BM2010.0044 |
2011 |
* |
Metabolism |
Abundance and diversity of dockerin-containing proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1. |
Rincon MT, Dassa B, Flint HJ, Travis AJ, Jindou S, Borovok I, Lamed R, Bayer EA, Henrissat B, Coutinho PM, Antonopoulos DA, Berg Miller ME, White BA |
PLoS One |
10.1371/journal.pone.0012476 |
2010 |
* |
Genetics |
Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1. |
Berg Miller ME, Antonopoulos DA, Rincon MT, Band M, Bari A, Akraiko T, Hernandez A, Thimmapuram J, Henrissat B, Coutinho PM, Borovok I, Jindou S, Lamed R, Flint HJ, Bayer EA, White BA |
PLoS One |
10.1371/journal.pone.0006650 |
2009 |
* |
Phylogeny |
Cellulosome gene cluster analysis for gauging the diversity of the ruminal cellulolytic bacterium Ruminococcus flavefaciens. |
Jindou S, Brulc JM, Levy-Assaraf M, Rincon MT, Flint HJ, Berg ME, Wilson MK, White BA, Bayer EA, Lamed R, Borovok I |
FEMS Microbiol Lett |
10.1111/j.1574-6968.2008.01234.x |
2008 |
* |
Metabolism |
Conservation and divergence in cellulosome architecture between two strains of Ruminococcus flavefaciens. |
Jindou S, Borovok I, Rincon MT, Flint HJ, Antonopoulos DA, Berg ME, White BA, Bayer EA, Lamed R |
J Bacteriol |
10.1128/JB.00973-06 |
2006 |
* |
Genetics |
Strain-specific genomic regions of Ruminococcus flavefaciens FD-1 as revealed by combinatorial random-phase genome sequencing and suppressive subtractive hybridization. |
Antonopoulos DA, Nelson KE, Morrison M, White BA |
Environ Microbiol |
10.1111/j.1462-2920.2004.00576.x |
2004 |
* |
Metabolism |
Solid residues from Ruminococcus cellulose fermentations as components of wood adhesive formulations. |
Weimer PJ, Conner AH, Lorenz LF |
Appl Microbiol Biotechnol |
10.1007/s00253-003-1334-3 |
2003 |
* |
Metabolism |
Differential protein phosphorylation-dephosphorylation in response to carbon source in Ruminococcus flavefaciens FD-1. |
Vercoe PE, Kocherginskaya SA, White BA |
J Appl Microbiol |
10.1046/j.1365-2672.2003.01929.x |
2003 |
* |
Metabolism |
Production of succinate from glucose, cellobiose, and various cellulosic materials by the ruminal anaerobic bacteria Fibrobacter succinogenes and Ruminococcus flavefaciens. |
Gokarn RR, Eiteman MA, Martin SA, Eriksson KE |
Appl Biochem Biotechnol |
10.1007/BF02785981 |
1997 |
* |
Metabolism |
Formation of formate and hydrogen, and flux of reducing equivalents and carbon in Ruminococcus flavefaciens FD-1. |
Shi Y, Weimer PJ, Ralph J |
Antonie Van Leeuwenhoek |
10.1023/a:1000256221938 |
1997 |
* |
Metabolism |
Competition for cellobiose among three predominant ruminal cellulolytic bacteria under substrate-excess and substrate-limited conditions. |
Shi Y, Weimer PJ |
Appl Environ Microbiol |
10.1128/aem.63.2.743-748.1997 |
1997 |
* |
Phylogeny |
Competition for cellulose among three predominant ruminal cellulolytic bacteria under substrate-excess and substrate-limited conditions. |
Shi Y, Odt CL, Weimer PJ |
Appl Environ Microbiol |
10.1128/aem.63.2.734-742.1997 |
1997 |
* |
Metabolism |
Utilization of individual cellodextrins by three predominant ruminal cellulolytic bacteria. |
Shi Y, Weimer PJ |
Appl Environ Microbiol |
10.1128/aem.62.3.1084-1088.1996 |
1996 |
* |
Genetics |
DNA sequence and transcriptional characterization of a beta-glucanase gene (celB) from Ruminococcus flavefaciens FD-1. |
Vercoe PE, Finks JL, White BA |
Can J Microbiol |
10.1139/m95-120 |
1995 |
* |
Metabolism |
The use of 16S rRNA-targeted oligonucleotide probes to study competition between ruminal fibrolytic bacteria: pure-culture studies with cellulose and alkaline peroxide-treated wheat straw. |
Odenyo AA, Mackie RI, Stahl DA, White BA |
Appl Environ Microbiol |
10.1128/aem.60.10.3697-3703.1994 |
1994 |
* |
Phylogeny |
The use of 16S rRNA-targeted oligonucleotide probes to study competition between ruminal fibrolytic bacteria: development of probes for Ruminococcus species and evidence for bacteriocin production. |
Odenyo AA, Mackie RI, Stahl DA, White BA |
Appl Environ Microbiol |
10.1128/aem.60.10.3688-3696.1994 |
1994 |
* |
Metabolism |
The restriction endonuclease RflFII, isolated from Ruminococcus flavefaciens FD-1, recognizes the sequence 5'-AGTACT-3', and is inhibited by site-specific adenine methylation. |
Morrison M, Mackie RI, White BA |
FEMS Microbiol Lett |
10.1111/j.1574-6968.1994.tb07162.x |
1994 |
* |
Genetics |
Transcriptional regulation of an endoglucanase and a cellodextrinase gene in Ruminococcus flavefaciens FD-1. |
Wang W, Reid SJ, Thomson JA |
J Gen Microbiol |
10.1099/00221287-139-6-1219 |
1993 |
* |
Metabolism |
Inhibition of ruminal cellulose fermentation by extracts of the perennial legume cicer milkvetch (Astragalus cicer). |
Weimer PJ, Hatfield RD, Buxton DR |
Appl Environ Microbiol |
10.1128/aem.59.2.405-409.1993 |
1993 |
* |
Metabolism |
Response surface analysis of the effects of pH and dilution rate on Ruminococcus flavefaciens FD-1 in cellulose-fed continuous culture. |
Shi Y, Weimer PJ |
Appl Environ Microbiol |
10.1128/aem.58.8.2583-2591.1992 |
1992 |
* |
Metabolism |
Partial characterization of a DNA restriction endonuclease from Ruminococcus flavefaciens FD-1 and its inhibition by site-specific adenine methylation. |
Morrison M, Mackie RI, White BA |
Appl Environ Microbiol |
10.1128/aem.58.1.66-69.1992 |
1992 |
* |
Metabolism |
Degradation of wheat straw and alkaline hydrogen peroxide-treated wheat straw by Ruminococcus albus 8 and Ruminococcus flavefaciens FD-1. |
Odenyo AA, Mackie RI, Fahey GC Jr, White BA |
J Anim Sci |
10.2527/1991.692819x |
1991 |
* |
Metabolism |
Cellobiose uptake and metabolism by Ruminococcus flavefaciens. |
Helaszek CT, White BA |
Appl Environ Microbiol |
10.1128/aem.57.1.64-68.1991 |
1991 |
* |
Enzymology |
Nucleotide sequence of the celA gene encoding a cellodextrinase of Ruminococcus flavefaciens FD-1. |
Wang WY, Thomson JA |
Mol Gen Genet |
10.1007/BF00633827 |
1990 |
* |
Enzymology |
Assessment of the endo-1,4-beta-glucanase components of Ruminococcus flavefaciens FD-1. |
Doerner KC, White BA |
Appl Environ Microbiol |
10.1128/aem.56.6.1844-1850.1990 |
1990 |
* |
Pathogenicity |
Analysis of antibiotic susceptibility and extrachromosomal DNA content of Ruminococcus albus and Ruminococcus flavefaciens. |
Champion KM, Helaszek CT, White BA |
Can J Microbiol |
10.1139/m88-196 |
1988 |
* |
Enzymology |
Methylcellulose inhibition of exo-beta-1,4-glucanase A from Ruminococcus flavefaciens FD-1. |
White BA, Rasmussen MA, Gardner RM |
Appl Environ Microbiol |
10.1128/aem.54.6.1634-1636.1988 |
1988 |
* |
Enzymology |
Purification and characterization of an exo-beta-1,4-glucanase from Ruminococcus flavefaciens FD-1. |
Gardner RM, Doerner KC, White BA |
J Bacteriol |
10.1128/jb.169.10.4581-4588.1987 |
1987 |
* |
|
Assessment of biases associated with profiling simple, model communities using terminal-restriction fragment length polymorphism-based analyses. |
Frey JC, Angert ER, Pell AN |
J Microbiol Methods |
10.1016/j.mimet.2006.02.011 |
2006 |
* |
|
Differential fermentation of cellulose allomorphs by ruminal cellulolytic bacteria. |
Weimer PJ, French AD, Calamari TA |
Appl Environ Microbiol |
10.1128/aem.57.11.3101-3106.1991 |
1991 |
* |
|
Effects of Cellulolytic Ruminal Bacteria and of Cell Extracts on Germination of Euonymus americanus L. Seeds. |
Howard GT, Elliott LP |
Appl Environ Microbiol |
10.1128/aem.54.1.218-224.1988 |
1988 |
* |