Name: Stagnimonas aquatica THS-13
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166515

Type strain:

Species: Stagnimonas aquatica

Strain Designation: THS-13

Culture col. no.: BCRC 81158, LMG 30925, KCTC 62868

NCBI tax ID(s): 2689987 (species)

Section

Stagnimonas aquatica THS-13 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from freshwater mesocosm at Hushan Elementary School.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Nevskiales*
	Family	*Nevskiaceae*
	Genus	*Stagnimonas*
	Species	**Stagnimonas aquatica**
	Full Scientific Name (LPSN)	Stagnimonas aquatica Sheu et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67920]	Gram stain	negative

[Ref.: #67920]	Cell length	1.0-1.6 µm

[Ref.: #67920]	Cell width	0.4-0.6 µm

[Ref.: #67920]	Cell shape	rod-shaped

[Ref.: #67920]	Motility	yes

[Ref.: #67920]	Flagellum arrangement	polar

[Ref.: #67920]	Colony size	0.7-1.0 µm
[Ref.: #67920]	Colony color	translucent white
[Ref.: #67920]	Colony shape	circular
[Ref.: #67920]	Incubation period	2 days
[Ref.: #67920]	Cultivation medium used	Reasoner's 2A agar (R2A)

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67920]			growth	20-37 °C
[Ref.: #67920]			optimum	25 °C

[Ref.: #67920]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #67920]			optimum	6
[Ref.: #67920]			growth	5.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67920]

Oxygen tolerance

aerobe

[Ref.: #67920]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67920]		NaCl		growth	0.0-2.0	%
[Ref.: #67920]		NaCl		optimum	1	%

[Ref.: #67920]	Observation	The predominant quinone is Q-8
[Ref.: #67920]	Observation	Phosphatidylethanolamine, phosphatidylglycerol, an uncharacterized aminophospholipid, an uncharacterized phospholipid and an uncharacterized aminolipid are present in the polar lipid profile

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67920]	2-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #67920]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #67920]	3-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #67920]	4-nitrophenyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #67920]	adipate ChEBI	-	assimilation
[Ref.: #67920]	amygdalin ChEBI	-	builds acid from
[Ref.: #67920]	arabinose ChEBI	-	assimilation
[Ref.: #67920]	arabinose ChEBI	+	aerobic growth
[Ref.: #67920]	arbutin ChEBI	-	builds acid from
[Ref.: #67920]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #67920]	casein	-	hydrolysis
[Ref.: #67920]	cellobiose ChEBI	-	builds acid from
[Ref.: #67920]	cellobiose ChEBI	-	aerobic growth
[Ref.: #67920]	chitin ChEBI	-	hydrolysis
[Ref.: #67920]	citrate ChEBI	-	assimilation
[Ref.: #67920]	corn oil	-	hydrolysis
[Ref.: #67920]	D-arabinose ChEBI	-	builds acid from
[Ref.: #67920]	D-arabitol ChEBI	-	builds acid from
[Ref.: #67920]	D-fructose ChEBI	-	builds acid from
[Ref.: #67920]	D-fructose ChEBI	+	aerobic growth
[Ref.: #67920]	D-fucose ChEBI	-	builds acid from
[Ref.: #67920]	D-galactose ChEBI	-	builds acid from
[Ref.: #67920]	D-galactose ChEBI	+	aerobic growth
[Ref.: #67920]	D-glucose ChEBI	+	builds acid from
[Ref.: #67920]	D-glucose ChEBI	+	aerobic growth
[Ref.: #67920]	D-mannitol ChEBI	-	builds acid from
[Ref.: #67920]	D-mannose ChEBI	+	builds acid from
[Ref.: #67920]	D-mannose ChEBI	-	aerobic growth
[Ref.: #67920]	D-rhamnose ChEBI	-	aerobic growth
[Ref.: #67920]	D-ribose ChEBI	-	builds acid from
[Ref.: #67920]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #67920]	D-tagatose ChEBI	-	builds acid from
[Ref.: #67920]	D-xylose ChEBI	-	builds acid from
[Ref.: #67920]	dextrin ChEBI	-	aerobic growth
[Ref.: #67920]	dna ChEBI	-	hydrolysis
[Ref.: #67920]	erythritol ChEBI	-	builds acid from
[Ref.: #67920]	esculin ChEBI	-	hydrolysis
[Ref.: #67920]	esculin ChEBI	-	builds acid from
[Ref.: #67920]	galactitol ChEBI	-	builds acid from
[Ref.: #67920]	gelatin ChEBI	-	hydrolysis
[Ref.: #67920]	gentiobiose ChEBI	-	builds acid from
[Ref.: #67920]	gluconate ChEBI	-	assimilation
[Ref.: #67920]	gluconate ChEBI	-	builds acid from
[Ref.: #67920]	glucose ChEBI	-	fermentation
[Ref.: #67920]	glucose ChEBI	-	assimilation
[Ref.: #67920]	glutamate ChEBI	-	builds acid from
[Ref.: #67920]	glycerol ChEBI	-	builds acid from
[Ref.: #67920]	glycogen ChEBI	-	builds acid from
[Ref.: #67920]	hexanoate ChEBI	-	assimilation
[Ref.: #67920]	inulin ChEBI	-	builds acid from
[Ref.: #67920]	L-arabinose ChEBI	-	builds acid from
[Ref.: #67920]	L-arabitol ChEBI	-	builds acid from
[Ref.: #67920]	L-asparagine ChEBI	-	aerobic growth
[Ref.: #67920]	L-fucose ChEBI	-	builds acid from
[Ref.: #67920]	L-histidine ChEBI	-	aerobic growth
[Ref.: #67920]	L-leucine ChEBI	+	aerobic growth
[Ref.: #67920]	L-proline ChEBI	+	aerobic growth
[Ref.: #67920]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #67920]	L-serine ChEBI	-	aerobic growth
[Ref.: #67920]	L-sorbose ChEBI	-	builds acid from
[Ref.: #67920]	L-xylose ChEBI	-	builds acid from
[Ref.: #67920]	lactose ChEBI	-	builds acid from
[Ref.: #67920]	lecithin ChEBI	-	hydrolysis
[Ref.: #67920]	malate ChEBI	-	assimilation
[Ref.: #67920]	maltose ChEBI	-	assimilation
[Ref.: #67920]	maltose ChEBI	-	builds acid from
[Ref.: #67920]	maltose ChEBI	+	aerobic growth
[Ref.: #67920]	mannitol ChEBI	-	assimilation
[Ref.: #67920]	mannose ChEBI	-	assimilation
[Ref.: #67920]	melezitose ChEBI	-	builds acid from
[Ref.: #67920]	melibiose ChEBI	-	builds acid from
[Ref.: #67920]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #67920]	myo-inositol ChEBI	-	builds acid from
[Ref.: #67920]	N-acetyl-D-glucosamine ChEBI	-	builds acid from
[Ref.: #67920]	N-acetyl-D-mannosamine ChEBI	-	assimilation
[Ref.: #67920]	nitrate ChEBI	-	reduction
[Ref.: #67920]	ornithine ChEBI	-	aerobic growth
[Ref.: #67920]	phenylacetate ChEBI	-	assimilation
[Ref.: #67920]	raffinose ChEBI	-	builds acid from
[Ref.: #67920]	raffinose ChEBI	-	aerobic growth
[Ref.: #67920]	ribitol ChEBI	-	builds acid from
[Ref.: #67920]	salicin ChEBI	-	builds acid from
[Ref.: #67920]	starch ChEBI	-	hydrolysis
[Ref.: #67920]	starch ChEBI	-	builds acid from
[Ref.: #67920]	sucrose ChEBI	-	builds acid from
[Ref.: #67920]	sucrose ChEBI	-	aerobic growth
[Ref.: #67920]	trehalose ChEBI	-	builds acid from
[Ref.: #67920]	trehalose ChEBI	-	aerobic growth
[Ref.: #67920]	turanose ChEBI	-	builds acid from
[Ref.: #67920]	tween 20 ChEBI	-	hydrolysis
[Ref.: #67920]	tween 40 ChEBI	-	hydrolysis
[Ref.: #67920]	tween 60 ChEBI	-	hydrolysis
[Ref.: #67920]	tween 80 ChEBI	-	hydrolysis
[Ref.: #67920]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #67920]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #67920]	acid phosphatase	+	3.1.3.2
[Ref.: #67920]	alkaline phosphatase	+	3.1.3.1
[Ref.: #67920]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #67920]	alpha-fucosidase	-	3.2.1.51
[Ref.: #67920]	alpha-galactosidase	-	3.2.1.22
[Ref.: #67920]	alpha-glucosidase	-	3.2.1.20
[Ref.: #67920]	alpha-mannosidase	-	3.2.1.24
[Ref.: #67920]	beta-galactosidase	-	3.2.1.23
[Ref.: #67920]	beta-glucosidase	-	3.2.1.21
[Ref.: #67920]	beta-glucuronidase	-	3.2.1.31
[Ref.: #67920]	catalase	-	1.11.1.6
[Ref.: #67920]	cystine arylamidase	-	3.4.11.3
[Ref.: #67920]	cytochrome oxidase	+	1.9.3.1
[Ref.: #67920]	esterase (C 4)	+
[Ref.: #67920]	esterase Lipase (C 8)	+
[Ref.: #67920]	L-arginine arylamidase	-
[Ref.: #67920]	leucine arylamidase	+	3.4.11.1
[Ref.: #67920]	lipase (C 14)	+
[Ref.: #67920]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #67920]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #67920]	trypsin	-	3.4.21.4
[Ref.: #67920]	urease	-	3.5.1.5
[Ref.: #67920]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #67920]

Fatty acid	Percentage
C18:1 w7c	33
C16:1 w7c / C16:1 w6c	19.5
C16:0 iso	18.7
C18:1 iso	4.4
C12:0 iso	3.7
C12:0	3.2
C16:0	2.2
C12:0 3OH	2.1
C20:0	2
C14:0 3OH/C16:1 ISO I	1.9
C17:0 iso	1.4
C16:1 iso H	1.3
C14:0	1.2
C17:0 iso	1.1
C14:0 iso	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67920]	Sample type/isolated from	freshwater mesocosm at Hushan Elementary School
[Ref.: #67920]	Geographic location (country and/or sea, region)	Tainan County
[Ref.: #67920]	Country	Taiwan
[Ref.: #67920]	Country ISO 3 Code	TWN
[Ref.: #67920]	Continent	Asia
[Ref.: #67920]	Geographic location	22.9458°/120.2300°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67920]	Stagnimonas aquatica strain THS-13 16S ribosomal RNA gene, partial sequence	MG649968	1477	ENA	2689987 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67920]	Stagnimonas aquatica THS-13	GCA_003730135	contig	GenBank	2689987 tax ID
[Ref.: #66792]	Stagnimonas aquatica THS-13	2881719674	draft	JGI IMG/M	2689987 tax ID	*

[Ref.: #67920]

GC-content

67.6 mol%

genome sequence analysis

Availability in culture collections External links

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Culture collection no.

BCRC 81158, LMG 30925, KCTC 62868

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Stagnimonas aquatica gen. nov., sp. nov., a new member of the family Nevskiaceae isolated from a freshwater mesocosm.	Sheu SY, Chen TY, Young CC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.003365	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67920

Shih-Yi Sheu, Tzu-Ying Chen, Chiu-Chung Young, Wen-Ming Chen: Stagnimonas aquatica gen. nov., sp. nov., a new member of the family Nevskiaceae isolated from a freshwater mesocosm. IJSEM 69: 1606 - 1612 2019 ( DOI 10.1099/ijsem.0.003365 )

* These data were automatically processed and therefore are not curated

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