Name: Croceicoccus ponticola GM-16
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166514

Type strain:

Species: Croceicoccus ponticola

Strain Designation: GM-16

Culture col. no.: KACC 19611, KCTC 62423, NBRC 113192

NCBI tax ID(s): 2217664 (species)

Section

Croceicoccus ponticola GM-16 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from seawater sample.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Croceicoccus*
	Species	**Croceicoccus ponticola**
	Full Scientific Name (LPSN)	Croceicoccus ponticola Park et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67855]	Gram stain	negative

[Ref.: #67855]	Cell length	0.4-10 µm

[Ref.: #67855]	Cell width	0.4-0.8 µm

[Ref.: #67855]	Cell shape	rod-shaped
[Ref.: #67855]	Cell shape	coccus-shaped
[Ref.: #67855]	Cell shape	ovoid-shaped

[Ref.: #67855]	Motility	no

[Ref.: #67855]	Colony size	0.5-1 mm
[Ref.: #67855]	Colony color	vivid yellow
[Ref.: #67855]	Colony shape	circular
[Ref.: #67855]	Incubation period	7 days
[Ref.: #67855]	Cultivation medium used	Marine agar (MA)

Information on culture and growth conditions Culture and growth conditions

	Kind of temperature		Temperature
[Ref.: #67855]		growth	20-35 °C
[Ref.: #67855]		optimum	30 °C
[Ref.: #67855]	no	growth	15 °C
[Ref.: #67855]	no	growth	37 °C

[Ref.: #67855]	Temperature range	mesophilic
[Ref.: #67855]	Temperature range	psychrophilic
[Ref.: #67855]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #67855]		optimum	7-8
[Ref.: #67855]		growth	5.5
[Ref.: #67855]	no	growth	5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67855]

Oxygen tolerance

aerobe

[Ref.: #67855]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67855]		NaCl		growth	0-4	%(w/v)
[Ref.: #67855]		NaCl		optimum	1-2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67855]	acetate ChEBI	+	carbon source
[Ref.: #67855]	acetate ChEBI	+	energy source
[Ref.: #67855]	benzoate ChEBI	-	carbon source
[Ref.: #67855]	benzoate ChEBI	-	energy source
[Ref.: #67855]	casein	-	hydrolysis
[Ref.: #67855]	cellobiose ChEBI	+	energy source
[Ref.: #67855]	cellobiose ChEBI	+	carbon source
[Ref.: #67855]	citrate ChEBI	-	carbon source
[Ref.: #67855]	citrate ChEBI	-	energy source
[Ref.: #67855]	D-fructose ChEBI	-	energy source
[Ref.: #67855]	D-fructose ChEBI	-	carbon source
[Ref.: #67855]	D-galactose ChEBI	-	energy source
[Ref.: #67855]	D-galactose ChEBI	-	carbon source
[Ref.: #67855]	D-glucose ChEBI	+	energy source
[Ref.: #67855]	D-glucose ChEBI	+	carbon source
[Ref.: #67855]	D-mannose ChEBI	-	energy source
[Ref.: #67855]	D-mannose ChEBI	-	carbon source
[Ref.: #67855]	D-xylose ChEBI	-	energy source
[Ref.: #67855]	D-xylose ChEBI	-	carbon source
[Ref.: #67855]	esculin ChEBI	+	hydrolysis
[Ref.: #67855]	formate ChEBI	-	carbon source
[Ref.: #67855]	formate ChEBI	-	energy source
[Ref.: #67855]	gelatin ChEBI	-	hydrolysis
[Ref.: #67855]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #67855]	L-arabinose ChEBI	-	energy source
[Ref.: #67855]	L-arabinose ChEBI	-	carbon source
[Ref.: #67855]	L-glutamate ChEBI	-	carbon source
[Ref.: #67855]	L-glutamate ChEBI	-	energy source
[Ref.: #67855]	L-malate ChEBI	-	carbon source
[Ref.: #67855]	L-malate ChEBI	-	energy source
[Ref.: #67855]	L-tyrosine ChEBI	+	hydrolysis
[Ref.: #67855]	magnesium(2+) ChEBI	-	required for growth
[Ref.: #67855]	maltose ChEBI	-	energy source
[Ref.: #67855]	maltose ChEBI	-	carbon source
[Ref.: #67855]	nitrate ChEBI	-	reduction
[Ref.: #67855]	pyruvate ChEBI	+	carbon source
[Ref.: #67855]	pyruvate ChEBI	+	energy source
[Ref.: #67855]	salicin ChEBI	-	carbon source
[Ref.: #67855]	salicin ChEBI	-	energy source
[Ref.: #67855]	starch ChEBI	-	hydrolysis
[Ref.: #67855]	succinate ChEBI	+	carbon source
[Ref.: #67855]	succinate ChEBI	+	energy source
[Ref.: #67855]	sucrose ChEBI	+	energy source
[Ref.: #67855]	sucrose ChEBI	+	carbon source
[Ref.: #67855]	trehalose ChEBI	-	energy source
[Ref.: #67855]	trehalose ChEBI	-	carbon source
[Ref.: #67855]	tween 80 ChEBI	+	hydrolysis
[Ref.: #67855]	urea ChEBI	-	hydrolysis
[Ref.: #67855]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #67855]	ampicillin ChEBI				yes	10	µg (disc)
[Ref.: #67855]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #67855]	cephalothin ChEBI	yes	30	µg (disc)
[Ref.: #67855]	chloramphenicol ChEBI	yes	100	µg (disc)
[Ref.: #67855]	gentamicin ChEBI	yes	30	µg (disc)
[Ref.: #67855]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #67855]	lincomycin ChEBI				yes	15	µg (disc)
[Ref.: #67855]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #67855]	novobiocin ChEBI	yes	5	µg (disc)
[Ref.: #67855]	oleandomycin ChEBI				yes	15	µg (disc)
[Ref.: #67855]	penicillin g ChEBI				yes	20	Unit (disc)
[Ref.: #67855]	polymyxin b ChEBI				yes	100	Unit (disc)
[Ref.: #67855]	streptomycin ChEBI				yes	50	µg (disc)
[Ref.: #67855]	tetracycline ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #67855]	acid phosphatase	-	3.1.3.2
[Ref.: #67855]	alkaline phosphatase	+	3.1.3.1
[Ref.: #67855]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #67855]	alpha-fucosidase	-	3.2.1.51
[Ref.: #67855]	alpha-galactosidase	-	3.2.1.22
[Ref.: #67855]	alpha-glucosidase	-	3.2.1.20
[Ref.: #67855]	alpha-mannosidase	-	3.2.1.24
[Ref.: #67855]	beta-galactosidase	-	3.2.1.23
[Ref.: #67855]	beta-glucosidase	-	3.2.1.21
[Ref.: #67855]	beta-glucuronidase	-	3.2.1.31
[Ref.: #67855]	catalase	+	1.11.1.6
[Ref.: #67855]	cystine arylamidase	+	3.4.11.3
[Ref.: #67855]	cytochrome oxidase	+	1.9.3.1
[Ref.: #67855]	esterase (C 4)	+
[Ref.: #67855]	esterase Lipase (C 8)	+
[Ref.: #67855]	leucine arylamidase	+	3.4.11.1
[Ref.: #67855]	lipase (C 14)	+
[Ref.: #67855]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #67855]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #67855]	trypsin	-	3.4.21.4
[Ref.: #67855]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #67855]

Fatty acid	Percentage
C18:1 w7c	50.5
C16:1 w7c / C16:1 w6c	16.1
C14:0 2OH	9.2
C16:0	8
C17:1 w6c	4.2
C16:0 2OH	1.9
C18:1 w5c	1.8
C16:0 iso 3OH	1.7
C16:1 2-OH	1.4
C18:1 2OH	1
C15:0 2OH	1

Metadata FA analysis

Reference

[Ref.: #67855]

Fatty acid	Percentage
C18:1 w7c	49.8
C16:1 w7c / C16:1 w6c	14.8
C14:0 2OH	9.3
C16:0	8.5
C17:1 w6c	4.3
C16:0 2OH	2.1
C18:1 w5c	2
C16:0 iso 3OH	1.7
C16:1 2-OH	1.5
C15:0 2OH	1.4
11-methyl C18:1w7c	1.4

Metadata FA analysis

Reference

[Ref.: #67855]

Fatty acid	Percentage
C18:1 w7c	47.4
C16:1 w7c / C16:1 w6c	13
C14:0 2OH	10.6
C16:0	9.6
C17:1 w6c	2.7
C16:0 2OH	2.6
C18:1 w5c	2.4
11-methyl C18:1w7c	1.9
C15:0 2OH	1.7
C16:0 iso 3OH	1.6
C17:1 w7c	1.4
C16:1 2-OH	1.4
C18:1 2OH	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67855]	Sample type/isolated from	seawater sample
[Ref.: #67855]	Geographic location (country and/or sea, region)	Pohang on the East Sea
[Ref.: #67855]	Country	Republic of Korea
[Ref.: #67855]	Country ISO 3 Code	KOR
[Ref.: #67855]	Continent	Asia
[Ref.: #67855]	Enrichment culture	marine agar 2216
[Ref.: #67855]	Enrichment culture duration	1 week
[Ref.: #67855]	Enrichment culture temperature	25 ̊C
[Ref.: #67855]	Isolation/enrichment procedure	serial dilution
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67855]	Croceicoccus sp. GM-16 16S ribosomal RNA gene, partial sequence	MH445510	1411	ENA	2217664 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67855]	Croceicoccus ponticola GM-16	GCA_004004515	contig	GenBank	2217664 tax ID
[Ref.: #66792]	Croceicoccus ponticola GM-16	2843088573	draft	JGI IMG/M	2217664 tax ID	*

[Ref.: #67855]	GC-content	62.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67855]	GC-content	62 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #67855]

Culture collection no.

KACC 19611, KCTC 62423, NBRC 113192

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Croceicoccus bisphenolivorans sp. nov., a bisphenol A-degrading bacterium isolated from seawater.	Li J, Hu A, Lv M, Yu CP	Int J Syst Evol Microbiol	10.1099/ijsem.0.004658	2021	*
Phylogeny	Croceicoccus ponticola sp. nov., a lipolytic bacterium isolated from seawater.	Park S, Won SM, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003301	2019	*
Phylogeny	Croceicoccus hydrothermalis sp. nov., isolated from shallow-sea hydrothermal system off Kueishantao Island.	Chen B, Ye Y, Lin D, Zhang M, Sun J, Tang K	Int J Syst Evol Microbiol	10.1099/ijsem.0.005472	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67855

Sooyeon Park, Sung-Min Won, Tae-Kwang Oh, Jung-Hoon Yoon: Croceicoccus ponticola sp. nov., a lipolytic bacterium isolated from seawater. IJSEM 69: 1551 - 1556 2019 ( DOI 10.1099/ijsem.0.003301 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Croceicoccus ponticola in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF