Name: Succinivibrio dextrinosolvens 0554
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16637

Type strain:

Species: Succinivibrio dextrinosolvens

Strain Designation: 0554, 24

Culture col. no.: DSM 3072, ATCC 19716

Strain history: <- ATCC <- W.E.C. Moore, 0554 <- M.P. Bryant, 24

NCBI tax ID(s): 1123324 (strain), 83771 (species)

SI-ID 37086

ATCC 19716, DSM 3072

Section

Succinivibrio dextrinosolvens 0554 is an anaerobe, mesophilic human pathogen that was isolated from rumen of cow.

anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Aeromonadales*
	Family	*Succinivibrionaceae*
	Genus	*Succinivibrio*
	Species	**Succinivibrio dextrinosolvens**
	Full Scientific Name (LPSN)	Succinivibrio dextrinosolvens Bryant and Small 1956 (Approved Lists 1980)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1291]

Culture medium

RUMEN BACTERIA MEDIUM (DSMZ Medium 330)

[Ref.: #1291]

Culture medium growth

[Ref.: #1291]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1291]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1291]			growth	37 °C

[Ref.: #1291]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1291]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1291]	Sample type/isolated from	rumen of cow
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Rumen
#Host Body-Site	#Gastrointestinal tract	#Stomach

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y17600 (>99% sequence identity) for Succinivibrio dextrinosolvens subclade from Microbeatlas

Aquatic Samples	539
Soil Samples	224
Animal Samples	13636
Plant Samples	377
Total Samples	14776

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1291]	Pathogenicity (human)	yes, in single cases
[Ref.: #1291]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1291]	Succinivibrio dextrinosolvens 16S rRNA gene, partial	Y17600	1463	ENA	83771 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Succinivibrio dextrinosolvens DSM 3072	GCA_900167015	contig	GenBank	1123324 tax ID	*
[Ref.: #66792]	Succinivibrio dextrinosolvens DSM 3072 strain DSM 3072	1123324.4	wgs	PATRIC	1123324 tax ID	*
[Ref.: #66792]	Succinivibrio dextrinosolvens DSM 3072	2585428075	draft	JGI IMG/M	1123324 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Succinivibrio dextrinosolvens DSM 3072 strain DSM 3072 PATRIC: 1123324.4
[Ref.: #69480]	motile	yes	80.116	no
[Ref.: #69480]	flagellated	no	56.339	no
[Ref.: #69480]	gram-positive	no	97.268	no
[Ref.: #69480]	anaerobic	yes	94.894	yes
[Ref.: #69480]	aerobic	no	97.193	yes
[Ref.: #69480]	halophile	no	76.789	no
[Ref.: #69480]	spore-forming	no	97.37	no
[Ref.: #69480]	thermophile	no	96.128	yes
[Ref.: #69480]	glucose-util	yes	76.405	no
[Ref.: #69480]	glucose-ferment	yes	61.924	no

Availability in culture collections External links

[Ref.: #1291]

Culture collection no.

DSM 3072, ATCC 19716

[Ref.: #85658]

SI-ID 37086

References

#1291

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3072

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#85658

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID37086.1 )

* These data were automatically processed and therefore are not curated

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Succinivibrio dextrinosolvens DSM 3072 strain DSM 3072

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