Succinivibrio dextrinosolvens (DSM 3072, ATCC 19716, 0554)

Name: Succinivibrio dextrinosolvens (DSM 3072, ATCC 19716, 0554)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16637

Type strain

Strain Designation 0554, 24

Culture col. no. DSM 3072 ATCC 19716 0554 24

NCBI tax ID(s) 1123324 83771

Special Collections DSMZ

History DSMZ <- ATCC; ATCC 19716 <- W. E. C. Moore, Virginia Polytechnical Institute and State University (VPI), Blacksburg, V., USA; 0554 <- M. P. Bryant, Beltsville Agricultural Res. Center, USA; 24

Links

Succinivibrio dextrinosolvens 0554 is an anaerobe bacterium that was isolated from rumen of cow.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 37086

ATCC 19716,DSM 3072

@ref 20215

Last LPSN update 2026-05-29 08:28:49

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Aeromonadales

Family Succinivibrionaceae

Genus Succinivibrio

Species Succinivibrio dextrinosolvens

Full scientific name Succinivibrio dextrinosolvens Bryant and Small 1956 (Approved Lists 1980)

BacDive ID	Other strains from **Succinivibrio dextrinosolvens** (1)	Type strain
174736	S. dextrinosolvens 22B, DSM 116430

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.616
125438	negative	94.483

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
1291	RUMEN BACTERIA MEDIUM (DSMZ Medium 330)		Medium recipe at MediaDive	Name: RUMEN BACTERIA MEDIUM (DSMZ Medium 330) Composition: Na2CO3 4.0 g/l Trypticase peptone 2.0 g/l D-Glucose 0.5 g/l Yeast extract 0.5 g/l Maltose 0.5 g/l Cellobiose 0.5 g/l Starch 0.5 g/l Glycerol 0.5 g/l NaCl 0.456 g/l K2HPO4 0.3 g/l L-Cysteine HCl x H2O 0.25 g/l Na2S x 9 H2O 0.25 g/l (NH4)2SO4 0.228 g/l KH2PO4 0.228 g/l MgSO4 x 7 H2O 0.095 g/l CaCl2 x 2 H2O 0.0608 g/l Hemin 0.001 g/l Sodium resazurin 0.0005 g/l NaOH None Distilled water
1291	YCFA-MEDIUM (MODIFIED) (DSMZ Medium 1611)		Medium recipe at MediaDive	Name: YCFA-MEDIUM (MODIFIED) (DSMZ Medium 1611) Composition: Casitone 10.0 g/l Glucose 5.0 g/l NaHCO3 4.0 g/l Yeast extract 2.5 g/l Acetic acid 1.78695 g/l L-Cysteine HCl 1.0 g/l NaCl 0.9 g/l Propionic acid 0.62559 g/l KH2PO4 0.45 g/l K2HPO4 0.45 g/l CaCl2 x 2 H2O 0.09 g/l n-Valeric acid 0.08451 g/l iso-Valeric acid 0.0837899 g/l iso-Butyric acid 0.07695 g/l MgSO4 x 7 H2O 0.045 g/l Hemin 0.01 g/l Resazurin 0.001 g/l Pyridoxine hydrochloride 0.0001 g/l Nicotinic acid 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavin 5e-05 g/l D-Calcium pantothenate 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Lipoic acid 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Vitamin B12 1e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
1291	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
1291	anaerobe
125439	obligate aerobe	94.372

Spore formation

@ref	Spore formation	Confidence
125439		99.963
125438		91.584

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Rumen
#Host Body-Site	#Gastrointestinal tract	#Stomach

Isolation

1291

Sample typerumen of cow

Taxonmaps

69479

Global distribution of 16S sequence Y17600 (>99% sequence identity) for Succinivibrio dextrinosolvens subclade from Microbeatlas

Aquatic Samples	539
Soil Samples	224
Animal Samples	13636
Plant Samples	377
Total Samples	14776

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
1291	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2585428075 annotated assembly for Succinivibrio dextrinosolvens DSM 3072	contig	GCA_900167015	1123324.4	2585428075	1123324	57.71

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
1291	Succinivibrio dextrinosolvens 16S rRNA gene, partial	Y17600	1463		83771

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2585428075 annotated assembly for Succinivibrio dextrinosolvens DSM 3072
NCBI: GCA_900167015

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.37	no
125439	gram_stain	BacteriaNetⓘ	negative	99.62	no
125439	spore_formation	BacteriaNetⓘ	no	99.96	no
125439	motility	BacteriaNetⓘ	yes	65.26	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Succinivibrio dextrinosolvens DSM 3072 strain DSM 3072
PATRIC: 1123324.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	94.48	no
125438	anaerobic	anaerobicⓘ	yes	73.39	yes
125438	spore-forming	spore-formingⓘ	no	91.58	no
125438	aerobic	aerobicⓘ	no	91.63	yes
125438	thermophilic	thermophileⓘ	no	93.33	yes
125438	flagellated	motile2+ⓘ	yes	57.33	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Complete Genome Sequencing and Transcriptome Analysis of Nitrogen Metabolism of Succinivibrio dextrinosolvens Strain Z6 Isolated From Dairy Cow Rumen.	Hailemariam S, Zhao S, Wang J.	Front Microbiol	10.3389/fmicb.2020.01826	2020
Transcriptome	Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep.	Kamke J, Soni P, Li Y, Ganesh S, Kelly WJ, Leahy SC, Shi W, Froula J, Rubin EM, Attwood GT.	BMC Res Notes	10.1186/s13104-017-2671-0	2017
Enzymology	Ileocolitis associated with Anaerobiospirillum in cats.	De Cock HE, Marks SL, Stacy BA, Zabka TS, Burkitt J, Lu G, Steffen DJ, Duhamel GE.	J Clin Microbiol	10.1128/jcm.42.6.2752-2758.2004	2004
Metabolism	Gut Bacteria Metabolism Impacts Immune Recovery in HIV-infected Individuals.	Serrano-Villar S, Rojo D, Martinez-Martinez M, Deusch S, Vazquez-Castellanos JF, Bargiela R, Sainz T, Vera M, Moreno S, Estrada V, Gosalbes MJ, Latorre A, Seifert J, Barbas C, Moya A, Ferrer M.	EBioMedicine	10.1016/j.ebiom.2016.04.033	2016
Metabolism	Identification of bacteriocin-like inhibitors from rumen Streptococcus spp. and isolation and characterization of bovicin 255.	Whitford MF, McPherson MA, Forster RJ, Teather RM.	Appl Environ Microbiol	10.1128/aem.67.2.569-574.2001	2001
Metabolism	Glucose and carbon dioxide metabolism by Succinivibrio dextrinosolvens.	O'Herrin SM, Kenealy WR.	Appl Environ Microbiol	10.1128/aem.59.3.748-755.1993	1993
Metabolism	1,4-Naphthoquinone and other nutrient requirements of Succinivibrio dextrinosolvens.	Gomez-Alarcon RA, O'Dowd C, Leedle JA, Bryant MP.	Appl Environ Microbiol	10.1128/aem.44.2.346-350.1982	1982
	Succinivibrio faecicola sp. nov., isolated from cow faeces.	Choi JY, Park JE, Choi SH, Kim JS, Lee JS, Lee JH, Kim HB, Lee JH, Kim JK, Kang SW, Park SH.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005631	2022

References

#1291	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3072
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Succinivibrio dextrinosolvens (DSM 3072, ATCC 19716, 0554)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900167015

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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