Name: Sphingomonas lenta 1PNM-20
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166148

Type strain:

Species: Sphingomonas lenta

Strain Designation: 1PNM-20

Culture col. no.: GDMCC 1.660, DSM 27572, GIMCC 1.660

Strain history: <- G. Feng; 1PNM-20 <- G. Feng, Guangdong Inst. Microbiology, Guangdong Academy Sci., P.R. China;

NCBI tax ID(s): 1141887 (species)

SI-ID 399098

DSM 27572

Section

Sphingomonas lenta 1PNM-20 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from abandoned lead-zinc mine.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Species	**Sphingomonas lenta**
	Full Scientific Name (LPSN)	Sphingomonas lenta Feng et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67961]	Gram stain	negative

[Ref.: #67961]	Cell shape	rod-shaped

[Ref.: #67961]	Motility	yes

[Ref.: #67961]	Flagellum arrangement	monotrichous, polar

[Ref.: #67961]	Colony size	1.0-2.0 mm
[Ref.: #67961]	Colony color	orange
[Ref.: #67961]	Incubation period	4 days
[Ref.: #67961]	Cultivation medium used	Reasoner's 2A agar (R2A)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #68614]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #68614]

Culture medium growth

[Ref.: #68614]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #67961]	growth	20-37 °C
[Ref.: #67961]	optimum	28-30 °C
[Ref.: #68614]	growth	28 °C

[Ref.: #67961]	Temperature range	mesophilic
[Ref.: #68614]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67961]

Oxygen tolerance

aerobe

[Ref.: #67961]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67961]		NaCl		growth	0.0-1.5	%(w/v)
[Ref.: #67961]		NaCl		optimum	0	%(w/v)

[Ref.: #67961]	Observation	The predominant respiratory quinone is ubiquinone 10
[Ref.: #67961]	Observation	the major polyamine is sym-homospermidine
[Ref.: #67961]	Observation	Polar lipids contain sphingoglycolipid, phosphatidylglycerol, diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, an unidentified phospholipid and an unidentified glycolipid

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67961]	adipate ChEBI	-	assimilation
[Ref.: #67961]	D-glucose ChEBI	-	assimilation
[Ref.: #67961]	D-mannitol ChEBI	-	assimilation
[Ref.: #67961]	D-mannose ChEBI	-	assimilation
[Ref.: #67961]	decanoate ChEBI	-	assimilation
[Ref.: #67961]	esculin ChEBI	+	hydrolysis
[Ref.: #67961]	gelatin ChEBI	-	hydrolysis
[Ref.: #67961]	glucose ChEBI	-	fermentation
[Ref.: #67961]	L-arabinose ChEBI	-	assimilation
[Ref.: #67961]	malate ChEBI	-	assimilation
[Ref.: #67961]	maltose ChEBI	-	assimilation
[Ref.: #67961]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #67961]	nitrate ChEBI	+/-	reduction
[Ref.: #67961]	phenylacetate ChEBI	-	assimilation
[Ref.: #67961]	potassium gluconate ChEBI	-	assimilation
[Ref.: #67961]	sodium citrate ChEBI	-	assimilation
[Ref.: #67961]	starch ChEBI	+	hydrolysis
[Ref.: #67961]	tween 40 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #67961]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #67961]	arginine dihydrolase	-	3.5.3.6
[Ref.: #67961]	beta-galactosidase	-	3.2.1.23
[Ref.: #67961]	catalase	+	1.11.1.6
[Ref.: #67961]	cytochrome oxidase	-	1.9.3.1
[Ref.: #67961]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67961]	Sample type/isolated from	abandoned lead-zinc mine
[Ref.: #67961]	Geographic location (country and/or sea, region)	Meizhou, Guangdong Province
[Ref.: #67961]	Country	China
[Ref.: #67961]	Country ISO 3 Code	CHN
[Ref.: #67961]	Continent	Asia
[Ref.: #67961]	Geographic location	24.3622°/116.2760°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67961]	Sphingomonas lenta strain 1PNM-20 16S ribosomal RNA gene, partial sequence	JQ608333	1434	ENA	1141887 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67961]	Sphingomonas lenta 1PNM-20	GCA_002288825	contig	GenBank	1141887 tax ID
[Ref.: #66792]	Sphingomonas lenta 1PNM-20	2881385165	draft	JGI IMG/M	1141887 tax ID	*

[Ref.: #67961]

GC-content

69.8 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #67961]

Culture collection no.

GDMCC 1.660, DSM 27572, GIMCC 1.660

[Ref.: #114755]

SI-ID 399098

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas lenta sp. nov., a slowly growing bacterium isolated from an abandoned lead-zinc mine.	Feng GD, Wang YH, Zhang XJ, Chen WD, Zhang J, Xiong X, Zhu HH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003427	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67961

Guang-Da Feng, Yong-Hong Wang, Xian-Jiao Zhang, Wen-Di Chen, Jun Zhang, Xiong Xiong, Hong-Hui Zhu: Sphingomonas lenta sp. nov., a slowly growing bacterium isolated from an abandoned lead-zinc mine. IJSEM 69: 2214 - 2219 2019 ( DOI 10.1099/ijsem.0.003427 )

#68614

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27572

#114755

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399098.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Sphingomonas lenta in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF