Name: Tabrizicola sediminis DRYC-M-16
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166147

Type strain:

Species: Tabrizicola sediminis

Strain Designation: DRYC-M-16

Culture col. no.: CGMCC 1.13881, KCTC 72015

NCBI tax ID(s): 2486418 (species)

Section

Tabrizicola sediminis DRYC-M-16 is an obligate aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from sludge samples from saline Dangreyongcuo Lake.

colony-forming
Gram-negative
rod-shaped
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	Rhodobacteraceae
	Genus	*Tabrizicola*
	Species	**Tabrizicola sediminis**
	Full Scientific Name (LPSN)	Tabrizicola sediminis Liu et al. 2019

Synonym

Pseudotabrizicola sediminis

Information on morphological and physiological properties Morphology

[Ref.: #68163]	Gram stain	negative
[Ref.: #68163]	Cell length	0.8-1.2 µm
[Ref.: #68163]	Cell width	0.6-0.8 µm
[Ref.: #68163]	Cell shape	rod-shaped
[Ref.: #68163]	Motility	no

[Ref.: #68163]	Colony color	pink
[Ref.: #68163]	Colony shape	circular
[Ref.: #68163]	Incubation period	2 days
[Ref.: #68163]	Cultivation medium used	2216L agar

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #68163]			growth	4-35 °C
[Ref.: #68163]			optimum	20-25 °C

	pH	Kind of pH		pH
[Ref.: #68163]			optimum	7.0-7.5
[Ref.: #68163]			growth	7.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68163]

Oxygen tolerance

obligate aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68163]		NaCl		growth	1-2	%(w/v)
[Ref.: #68163]		NaCl		optimum	1.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68163]	(-)-quinic acid ChEBI	-	carbon source
[Ref.: #68163]	2-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #68163]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #68163]	3-O-methyl-D-glucose ChEBI	-	carbon source
[Ref.: #68163]	4-hydroxyphenylacetic acid ChEBI	-	carbon source
[Ref.: #68163]	acetic acid ChEBI	+	carbon source
[Ref.: #68163]	acetoacetate ChEBI	-	carbon source
[Ref.: #68163]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #68163]	amygdalin ChEBI	-	builds acid from
[Ref.: #68163]	arbutin ChEBI	-	builds acid from
[Ref.: #68163]	beta-D-glucuronic acid ChEBI	+	carbon source
[Ref.: #68163]	bromosuccinate ChEBI	+	carbon source
[Ref.: #68163]	casein	-	hydrolysis
[Ref.: #68163]	cellobiose ChEBI	+/-	builds acid from
[Ref.: #68163]	cellobiose ChEBI	+	carbon source
[Ref.: #68163]	citrate ChEBI	-	assimilation
[Ref.: #68163]	citrate ChEBI	+	carbon source
[Ref.: #68163]	D-arabinose ChEBI	-	builds acid from
[Ref.: #68163]	D-arabitol ChEBI	+/-	builds acid from
[Ref.: #68163]	D-arabitol ChEBI	+	carbon source
[Ref.: #68163]	D-aspartate ChEBI	-	carbon source
[Ref.: #68163]	D-fructose ChEBI	+	builds acid from
[Ref.: #68163]	D-fructose ChEBI	+	carbon source
[Ref.: #68163]	D-fructose 6-phosphate ChEBI	-	carbon source
[Ref.: #68163]	D-fucose ChEBI	+	builds acid from
[Ref.: #68163]	D-fucose ChEBI	-	carbon source
[Ref.: #68163]	D-galactonic acid lactone ChEBI	+	carbon source
[Ref.: #68163]	D-galactose ChEBI	-	builds acid from
[Ref.: #68163]	D-galactose ChEBI	+	carbon source
[Ref.: #68163]	D-galacturonic acid ChEBI	+	carbon source
[Ref.: #68163]	D-gluconate ChEBI	+	carbon source
[Ref.: #68163]	D-glucose ChEBI	+	builds acid from
[Ref.: #68163]	D-glucose 6-phosphate ChEBI	-	carbon source
[Ref.: #68163]	D-lactic acid methyl ester	-	carbon source
[Ref.: #68163]	D-lyxose ChEBI	-	builds acid from
[Ref.: #68163]	D-malate ChEBI	+	carbon source
[Ref.: #68163]	D-mannitol ChEBI	-	builds acid from
[Ref.: #68163]	D-mannitol ChEBI	-	carbon source
[Ref.: #68163]	D-mannose ChEBI	+	builds acid from
[Ref.: #68163]	D-mannose ChEBI	+	carbon source
[Ref.: #68163]	D-ribose ChEBI	-	builds acid from
[Ref.: #68163]	D-saccharate ChEBI	-	carbon source
[Ref.: #68163]	D-salicin ChEBI	+	carbon source
[Ref.: #68163]	D-serine ChEBI	-	carbon source
[Ref.: #68163]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #68163]	D-sorbitol ChEBI	-	carbon source
[Ref.: #68163]	D-tagatose ChEBI	-	builds acid from
[Ref.: #68163]	D-xylose ChEBI	+/-	builds acid from
[Ref.: #68163]	dextrin ChEBI	-	carbon source
[Ref.: #68163]	erythritol ChEBI	-	builds acid from
[Ref.: #68163]	esculin ChEBI	-	hydrolysis
[Ref.: #68163]	esculin ferric citrate	+	builds acid from
[Ref.: #68163]	formate ChEBI	+	carbon source
[Ref.: #68163]	galactarate ChEBI	-	carbon source
[Ref.: #68163]	galactitol ChEBI	-	builds acid from
[Ref.: #68163]	gamma-aminobutyric acid ChEBI	+	carbon source
[Ref.: #68163]	gelatin ChEBI	-	hydrolysis
[Ref.: #68163]	gelatin ChEBI	-	carbon source
[Ref.: #68163]	gentiobiose ChEBI	+/-	builds acid from
[Ref.: #68163]	gentiobiose ChEBI	+	carbon source
[Ref.: #68163]	glucose ChEBI	-	fermentation
[Ref.: #68163]	glucuronamide ChEBI	+	carbon source
[Ref.: #68163]	glycerol ChEBI	-	builds acid from
[Ref.: #68163]	glycerol ChEBI	+	carbon source
[Ref.: #68163]	glycogen ChEBI	-	builds acid from
[Ref.: #68163]	glycyl-L-proline ChEBI	-	carbon source
[Ref.: #68163]	inosine ChEBI	+	carbon source
[Ref.: #68163]	inulin ChEBI	-	builds acid from
[Ref.: #68163]	L-alanine ChEBI	+	carbon source
[Ref.: #68163]	L-arabinose ChEBI	-	builds acid from
[Ref.: #68163]	L-arabitol ChEBI	-	builds acid from
[Ref.: #68163]	L-arginine ChEBI	-	carbon source
[Ref.: #68163]	L-aspartate ChEBI	+	carbon source
[Ref.: #68163]	L-fucose ChEBI	+/-	builds acid from
[Ref.: #68163]	L-fucose ChEBI	+	carbon source
[Ref.: #68163]	L-glutamate ChEBI	+	carbon source
[Ref.: #68163]	L-histidine ChEBI	-	carbon source
[Ref.: #68163]	L-lactate	+	carbon source
[Ref.: #68163]	L-malate ChEBI	+	carbon source
[Ref.: #68163]	L-pyroglutamic acid ChEBI	-	carbon source
[Ref.: #68163]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #68163]	L-rhamnose ChEBI	-	carbon source
[Ref.: #68163]	L-serine ChEBI	+	carbon source
[Ref.: #68163]	L-sorbose ChEBI	-	builds acid from
[Ref.: #68163]	L-xylose ChEBI	-	builds acid from
[Ref.: #68163]	lactose ChEBI	-	builds acid from
[Ref.: #68163]	lactose ChEBI	-	carbon source
[Ref.: #68163]	maltose ChEBI	+/-	builds acid from
[Ref.: #68163]	maltose ChEBI	+	carbon source
[Ref.: #68163]	melezitose ChEBI	-	builds acid from
[Ref.: #68163]	melibiose ChEBI	-	builds acid from
[Ref.: #68163]	melibiose ChEBI	+	carbon source
[Ref.: #68163]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #68163]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #68163]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #68163]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #68163]	myo-inositol ChEBI	-	builds acid from
[Ref.: #68163]	myo-inositol ChEBI	+	carbon source
[Ref.: #68163]	N-acetyl-beta-D-mannosamine ChEBI	-	carbon source
[Ref.: #68163]	n-acetyl-D-galactosamine ChEBI	-	carbon source
[Ref.: #68163]	N-acetyl-D-glucosamine ChEBI	-	carbon source
[Ref.: #68163]	n-acetyl-neuraminic acid	-	carbon source
[Ref.: #68163]	N-acetylglucosamine ChEBI	+/-	builds acid from
[Ref.: #68163]	nitrate ChEBI	-	reduction
[Ref.: #68163]	pectin ChEBI	-	carbon source
[Ref.: #68163]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #68163]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #68163]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #68163]	propionate ChEBI	+	carbon source
[Ref.: #68163]	raffinose ChEBI	+	builds acid from
[Ref.: #68163]	raffinose ChEBI	+	carbon source
[Ref.: #68163]	ribitol ChEBI	-	builds acid from
[Ref.: #68163]	salicin ChEBI	+/-	builds acid from
[Ref.: #68163]	stachyose ChEBI	+	carbon source
[Ref.: #68163]	starch ChEBI	-	hydrolysis
[Ref.: #68163]	starch ChEBI	+	builds acid from
[Ref.: #68163]	sucrose ChEBI	+	builds acid from
[Ref.: #68163]	sucrose ChEBI	+	carbon source
[Ref.: #68163]	trehalose ChEBI	+/-	builds acid from
[Ref.: #68163]	trehalose ChEBI	+	carbon source
[Ref.: #68163]	turanose ChEBI	+	builds acid from
[Ref.: #68163]	turanose ChEBI	+	carbon source
[Ref.: #68163]	tween 20 ChEBI	-	hydrolysis
[Ref.: #68163]	tween 40 ChEBI	-	carbon source
[Ref.: #68163]	tween 80 ChEBI	-	hydrolysis
[Ref.: #68163]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68163]		acetoin ChEBI
[Ref.: #68163]		hydrogen sulfide ChEBI
[Ref.: #68163]		indole ChEBI

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68163]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #68163]	acid phosphatase	+/-	3.1.3.2
[Ref.: #68163]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68163]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #68163]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68163]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68163]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68163]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68163]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68163]	beta-galactosidase	+	3.2.1.23
[Ref.: #68163]	beta-glucosidase	+	3.2.1.21
[Ref.: #68163]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68163]	catalase	+	1.11.1.6
[Ref.: #68163]	cystine arylamidase	-	3.4.11.3
[Ref.: #68163]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68163]	DNase	-
[Ref.: #68163]	esterase (C 4)	+
[Ref.: #68163]	esterase Lipase (C 8)	+
[Ref.: #68163]	leucine arylamidase	+	3.4.11.1
[Ref.: #68163]	lipase (C 14)	-
[Ref.: #68163]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68163]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #68163]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68163]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68163]	phenylalanine deaminase	+/-	4.3.1.5
[Ref.: #68163]	trypsin	-	3.4.21.4
[Ref.: #68163]	urease	-	3.5.1.5
[Ref.: #68163]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68163]

Fatty acid	Percentage
C18:1 w7c/C18:1 w6c	44.9
C18:0 iso	15.1
C15:0 anteiso	7.5
C15:1 anteiso A	6.8
C16:0	5
C18:0	4.1
C15:0 iso	3
C10:0 3OH	2.5
C14:0	1.2
C18:1 w9c	1.2
C18:0 3OH	1
C20:1 w7c	0.5
C18:1 w7c 11-methyl	0.4

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68163]	Sample type/isolated from	sludge samples from saline Dangreyongcuo Lake
[Ref.: #68163]	Geographic location (country and/or sea, region)	Tibet
[Ref.: #68163]	Country	China
[Ref.: #68163]	Country ISO 3 Code	CHN
[Ref.: #68163]	Continent	Asia
[Ref.: #68163]	Enrichment culture	marine agar 2216
[Ref.: #68163]	Enrichment culture temperature	22 ̊C
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MK693145 (>99% sequence identity) for Rhodobacteraceae from Microbeatlas

Aquatic Samples	295
Soil Samples	15
Animal Samples	44
Plant Samples	3
Total Samples	357

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68163]	Tabrizicola sp. strain DRYC_M_16 16S ribosomal RNA gene, partial sequence	MK693145	1338	ENA	2005166 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68163]	Tabrizicola sediminis DRYC-M-16	GCA_004745575	contig	GenBank	2486418 tax ID

[Ref.: #68163]

GC-content

63 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #68163]

Culture collection no.

CGMCC 1.13881, KCTC 72015

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Szabonella alba gen. nov., sp. nov., a motile alkaliphilic bacterium of the family Rhodobacteraceae isolated from a soda lake.	Szuroczki S, Abbaszade G, Boka K, Schumann P, Neumann-Schaal M, Toth E	Int J Syst Evol Microbiol	10.1099/ijsem.0.005219	2022	*
Phylogeny	Tabrizicola piscis sp. nov., isolated from the intestinal tract of a Korean indigenous freshwater fish, Acheilognathus koreensis.	Han JE, Kang W, Lee JY, Sung H, Hyun DW, Kim HS, Kim PS, Tak EJ, Jeong YS, Lee JY, Lee SY, Yun JH, Jung MJ, Shin NR, Whon TW, Kang MS, Lee KE, Lee BH, Bae JW	Int J Syst Evol Microbiol	10.1099/ijsem.0.004034	2020	*
Phylogeny	Tabrizicola sediminis sp. nov., one aerobic anoxygenic photoheterotrophic bacteria from sediment of saline lake.	Liu ZX, Dorji P, Liu HC, Li AH, Zhou YG	Int J Syst Evol Microbiol	10.1099/ijsem.0.003542	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#68163

Zi-Xuan Liu, Phurbu Dorji, Hong-Can Liu, Ai-Hua Li and Yu-Guang Zhou: Tabrizicola sediminis sp. nov., one aerobic anoxygenic photoheterotrophic bacteria from sediment of saline lake. IJSEM 69: 2565 - 2570 2019 ( DOI 10.1099/ijsem.0.003542 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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