Streptosporangium subroseum (DSM 44662, CCRC 16302, CCTCC 97008)

Name: Streptosporangium subroseum (DSM 44662, CCRC 16302, CCTCC 97008)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16613

Type strain

Strain Designation CY-7113

Culture col. no. DSM 44662 CCRC 16302 CCTCC 97008 CY-7113 CGMCC 4.2132 3 more

NCBI tax ID(s) 106412

Special Collections DSMZ JCM

History DSMZ <- L. Zhang; CY-7113 JCM <-- CCRC 16302 <-- L.-P. Zhang CY-7113.

Links

Streptosporangium subroseum CY-7113 is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 100982

JCM 11962,CCRC 16302,DSM 44662,BCRC 16302,CGMCC 4.2132

@ref 20215

Last LPSN update 2026-05-29 08:28:49

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Streptosporangiaceae

Genus Streptosporangium

Species Streptosporangium subroseum

Full scientific name Streptosporangium subroseum Zhang et al. 2002

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125439		91.071
125439		96.229	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
11858	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
11858	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
11858	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.145
125439	obligate aerobe	96.261

Observation

67770

Observationquinones: MK-9, MK-9(H₂), MK-9(H₄)

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	ribulose monophosphate pathway	100	2 of 2
66794	3-chlorocatechol degradation	100	5 of 5
66794	palmitate biosynthesis	100	22 of 22
66794	daunorubicin biosynthesis	100	9 of 9
66794	IAA biosynthesis	100	3 of 3
66794	glycogen metabolism	100	5 of 5
66794	methylglyoxal degradation	100	5 of 5
66794	butanoate fermentation	100	4 of 4
66794	resorcinol degradation	100	2 of 2
66794	gallate degradation	100	5 of 5
66794	valine metabolism	100	9 of 9
66794	adipate degradation	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	starch degradation	100	10 of 10
66794	biotin biosynthesis	100	4 of 4
66794	acetate fermentation	100	4 of 4
66794	propanol degradation	100	7 of 7
66794	denitrification	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	vitamin K metabolism	100	5 of 5
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	pentose phosphate pathway	100	11 of 11
66794	suberin monomers biosynthesis	100	2 of 2
66794	taurine degradation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	myo-inositol biosynthesis	100	10 of 10
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	Entner Doudoroff pathway	100	10 of 10
66794	cardiolipin biosynthesis	100	7 of 7
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	glycolysis	94.12	16 of 17
66794	glutamate and glutamine metabolism	92.86	26 of 28
66794	urea cycle	92.31	12 of 13
66794	phenylalanine metabolism	92.31	12 of 13
66794	threonine metabolism	90	9 of 10
66794	purine metabolism	89.36	84 of 94
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	d-mannose degradation	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	vitamin B12 metabolism	88.24	30 of 34
66794	dTDPLrhamnose biosynthesis	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	flavin biosynthesis	86.67	13 of 15
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	glutathione metabolism	85.71	12 of 14
66794	heme metabolism	85.71	12 of 14
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	tryptophan metabolism	84.21	32 of 38
66794	degradation of aromatic, nitrogen containing compounds	83.33	10 of 12
66794	pyrimidine metabolism	82.22	37 of 45
66794	proline metabolism	81.82	9 of 11
66794	metabolism of disaccharids	81.82	9 of 11
66794	degradation of sugar alcohols	81.25	13 of 16
66794	hydrogen production	80	4 of 5
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	histidine metabolism	79.31	23 of 29
66794	citric acid cycle	78.57	11 of 14
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	degradation of pentoses	78.57	22 of 28
66794	allantoin degradation	77.78	7 of 9
66794	degradation of hexoses	77.78	14 of 18
66794	lipid metabolism	77.42	24 of 31
66794	leucine metabolism	76.92	10 of 13
66794	vitamin B1 metabolism	76.92	10 of 13
66794	alanine metabolism	75.86	22 of 29
66794	cyclohexanol degradation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	arginine metabolism	75	18 of 24
66794	glycogen biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	phenol degradation	75	15 of 20
66794	isoleucine metabolism	75	6 of 8
66794	non-pathway related	73.68	28 of 38
66794	3-phenylpropionate degradation	73.33	11 of 15
66794	d-xylose degradation	72.73	8 of 11
66794	cysteine metabolism	72.22	13 of 18
66794	tyrosine metabolism	71.43	10 of 14
66794	oxidative phosphorylation	71.43	65 of 91
66794	methionine metabolism	69.23	18 of 26
66794	isoprenoid biosynthesis	69.23	18 of 26
66794	sulfate reduction	69.23	9 of 13
66794	lysine metabolism	69.05	29 of 42
66794	degradation of sugar acids	68	17 of 25
66794	cyanate degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	sphingosine metabolism	66.67	4 of 6
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	octane oxidation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	polyamine pathway	65.22	15 of 23
66794	ketogluconate metabolism	62.5	5 of 8
66794	carnitine metabolism	62.5	5 of 8
66794	phenylpropanoid biosynthesis	61.54	8 of 13
66794	phosphatidylethanolamine bioynthesis	61.54	8 of 13
66794	glycine betaine biosynthesis	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	creatinine degradation	60	3 of 5
66794	bile acid biosynthesis, neutral pathway	58.82	10 of 17
66794	aclacinomycin biosynthesis	57.14	4 of 7
66794	androgen and estrogen metabolism	56.25	9 of 16
66794	lipid A biosynthesis	55.56	5 of 9
66794	ascorbate metabolism	54.55	12 of 22
66794	cholesterol biosynthesis	54.55	6 of 11
66794	alginate biosynthesis	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	coenzyme M biosynthesis	50	5 of 10
66794	toluene degradation	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	CMP-KDO biosynthesis	50	2 of 4
66794	catecholamine biosynthesis	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	4-hydroxyphenylacetate degradation	50	5 of 10
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	kanosamine biosynthesis II	50	1 of 2
66794	carotenoid biosynthesis	45.45	10 of 22
66794	nitrate assimilation	44.44	4 of 9
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	D-cycloserine biosynthesis	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	vitamin B6 metabolism	36.36	4 of 11
66794	1,4-dihydroxy-6-naphthoate biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	chlorophyll metabolism	33.33	6 of 18
66794	sulfoquinovose degradation	33.33	1 of 3
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	vitamin E metabolism	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	diterpene phytoalexins precursors biosynthesis	25	4 of 16

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
11858	soil	Yunnan	China	CHN	Asia
67770	Soil	Yunnan Province	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11858	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2671180041 annotated assembly for Streptosporangium subroseum CGMCC 4.2132	scaffold	GCA_900188345	106412.3	2671180041	106412	33.2

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
11858	Streptosporangium sp. 7113 16S ribosomal RNA gene, partial sequence	AF191734	1419		106412
67770	Streptosporangium subroseum JCM 11962 gene for 16S ribosomal RNA, partial sequence	LC439285	1487		106412

GC content

@ref	GC-content (mol%)	Method
11858	71.52
67770	71.52	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2671180041 annotated assembly for Streptosporangium subroseum CGMCC 4.2132
BV-BRC: 106412.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	96.23	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.26	no
125439	motility	BacteriaNetⓘ	no	91.07	no
125439	spore_formation	BacteriaNetⓘ	yes	56.04	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptosporangium subroseum strain CGMCC 4.2132
PATRIC: 106412.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.09	no
125438	anaerobic	anaerobicⓘ	no	93.37	no
125438	spore-forming	spore-formingⓘ	yes	89.04	no
125438	aerobic	aerobicⓘ	yes	90.15	no
125438	thermophilic	thermophileⓘ	no	95.50	no
125438	flagellated	motile2+ⓘ	no	76.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Response of Secondary Metabolism of Hypogean Actinobacterial Genera to Chemical and Biological Stimuli.	Covington BC, Spraggins JM, Ynigez-Gutierrez AE, Hylton ZB, Bachmann BO.	Appl Environ Microbiol	10.1128/aem.01125-18	2018
Phylogeny	Streptosporangium subroseum sp. nov., an actinomycete with an unusual phospholipid pattern.	Zhang LP, Jiang CL, Chen WX	Int J Syst Evol Microbiol	10.1099/00207713-52-4-1235	2002

References

#11858	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44662
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Streptosporangium subroseum (DSM 44662, CCRC 16302, CCTCC 97008)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900188345

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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