Porphyromonas gingivalis (JCM 8525)

Name: Porphyromonas gingivalis (JCM 8525)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 165806

Type strain

Culture col. no. JCM 8525

NCBI tax ID(s) 837

Special Collections JCM

History JCM <-- Tokyo Med. Dent. Univ. <-- J. J. Zambon 381.

Links

Porphyromonas gingivalis JCM 8525 is a bacterium that was isolated from Gingival crevice.

16S sequence Bacteria

Name and taxonomic classification

SI-ID 65480

JCM 8525

@ref 20215

Last LPSN update 2026-05-29 08:45:44

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Porphyromonadaceae

Genus Porphyromonas

Species Porphyromonas gingivalis

Full scientific name Porphyromonas gingivalis (Coykendall et al. 1980) Shah and Collins 1988

Synonyms (1)

Bacteroides gingivalis

BacDive ID	Other strains from **Porphyromonas gingivalis** (8)	Type strain
12506	P. gingivalis 2561, DSM 20709, ATCC 33277, CIP 103683, ... (type strain)
24337	P. gingivalis HG66, DSM 28984
144481	P. gingivalis CCUG 25211
144483	P. gingivalis CCUG 25226
144589	P. gingivalis CCUG 25839
144832	P. gingivalis CCUG 26712
145130	P. gingivalis CCUG 27724
162568	P. gingivalis JCM 19600

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

67770

Sample typeGingival crevice

Taxonmaps

69479

Global distribution of 16S sequence AB547661 (>99% sequence identity) for Porphyromonas gingivalis subclade from Microbeatlas

Aquatic Samples	1398
Soil Samples	1092
Animal Samples	32086
Plant Samples	451
Total Samples	35027

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Porphyromonas gingivalis gene for 16S ribosomal RNA, partial sequence, strain: JCM 8525	AB547661	1481		837

GC content

@ref	GC-content (mol%)	Method
67770	49.5	thermal denaturation, midpoint method (Tm)
67770	47.8	Buoyant density centrifugation (BD)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Effects of Green Tea Extract Epigallocatechin-3-Gallate on Oral Diseases: A Narrative Review.	Li Y, Cheng L, Li M.	Pathogens	10.3390/pathogens13080634	2024
Metabolism	Gut bacteria identified in colorectal cancer patients promote tumourigenesis via butyrate secretion.	Okumura S, Konishi Y, Narukawa M, Sugiura Y, Yoshimoto S, Arai Y, Sato S, Yoshida Y, Tsuji S, Uemura K, Wakita M, Matsudaira T, Matsumoto T, Kawamoto S, Takahashi A, Itatani Y, Miki H, Takamatsu M, Obama K, Takeuchi K, Suematsu M, Ohtani N, Fukunaga Y, Ueno M, Sakai Y, Nagayama S, Hara E.	Nat Commun	10.1038/s41467-021-25965-x	2021
	The Influence of 2-Methacryloyloxyethyl Phosphorylcholine Polymer Materials on Orthodontic Friction and Attachment of Oral Bacteria.	Kunimatsu R, Tsuka Y, Nakajima K, Sumi K, Yoshimi Y, Kado I, Inada A, Kiritoshi Y, Tanimoto K.	Materials (Basel)	10.3390/ma15165770	2022
	The Involvement of Oral Pathogenic Bacteria, Fusobacterium nucleatum Subspecies animalis in the Pathogenesis of Human Esophageal Adenocarcinoma	Kitano T, Okumura S, Matsumoto T, Tsunoda S, Nishigori T, Obama K, Hara E.	Gastro Hep Adv		2025
Pathogenicity	Inhibitory effects of lactoferrin on growth and biofilm formation of Porphyromonas gingivalis and Prevotella intermedia.	Wakabayashi H, Yamauchi K, Kobayashi T, Yaeshima T, Iwatsuki K, Yoshie H.	Antimicrob Agents Chemother	10.1128/aac.01688-08	2009
Enzymology	Development of 16S rRNA-gene-targeted group-specific primers for the detection and identification of predominant bacteria in human feces.	Matsuki T, Watanabe K, Fujimoto J, Miyamoto Y, Takada T, Matsumoto K, Oyaizu H, Tanaka R.	Appl Environ Microbiol	10.1128/aem.68.11.5445-5451.2002	2002
Phylogeny	Distribution of different species of the Bacteroides fragilis group in individuals with Japanese cedar pollinosis.	Odamaki T, Xiao JZ, Sakamoto M, Kondo S, Yaeshima T, Iwatsuki K, Togashi H, Enomoto T, Benno Y.	Appl Environ Microbiol	10.1128/aem.01106-08	2008
Enzymology	Use of 16S rRNA gene-targeted group-specific primers for real-time PCR analysis of predominant bacteria in human feces.	Matsuki T, Watanabe K, Fujimoto J, Takada T, Tanaka R.	Appl Environ Microbiol	10.1128/aem.70.12.7220-7228.2004	2004

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Porphyromonas gingivalis (JCM 8525)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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