Strain identifier
BacDive ID: 165806
Type strain:
Species: Porphyromonas gingivalis
Strain history: Tokyo Med. Dent. Univ. <-- J. J. Zambon 381.
NCBI tax ID(s): 837 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 165806
keywords: 16S sequence, Bacteria, mesophilic
description: Porphyromonas gingivalis JCM 8525 is a mesophilic bacterium that was isolated from Gingival crevice.
NCBI tax id
- NCBI tax id: 837
- Matching level: species
strain history
- @ref: 67770
- history: Tokyo Med. Dent. Univ. <-- J. J. Zambon 381.
doi: 10.13145/bacdive165806.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Porphyromonadaceae
- genus: Porphyromonas
- species: Porphyromonas gingivalis
- full scientific name: Porphyromonas gingivalis (Coykendall et al. 1980) Shah and Collins 1988
synonyms
- @ref: 20215
- synonym: Bacteroides gingivalis
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Porphyromonadaceae
genus: Porphyromonas
species: Porphyromonas gingivalis
full scientific name: Porphyromonas gingivalis (Coykendall et al. 1980) Shah and Collins 1988
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Gingival crevice
taxonmaps
- @ref: 69479
- File name: preview.99_847.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15851;96_508;97_586;98_673;99_847&stattab=map
- Last taxonomy: Porphyromonas gingivalis subclade
- 16S sequence: AB547661
- Sequence Identity:
- Total samples: 35027
- soil counts: 1092
- aquatic counts: 1398
- animal counts: 32086
- plant counts: 451
Sequence information
16S sequences
- @ref: 67770
- description: Porphyromonas gingivalis gene for 16S ribosomal RNA, partial sequence, strain: JCM 8525
- accession: AB547661
- length: 1481
- database: ena
- NCBI tax ID: 837
GC content
@ref | GC-content | method |
---|---|---|
67770 | 49.5 | thermal denaturation, midpoint method (Tm) |
67770 | 47.8 | Buoyant density centrifugation (BD) |
External links
@ref: 67770
culture collection no.: JCM 8525
straininfo link
- @ref: 114629
- straininfo: 65480
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
114629 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID65480.1 |