Name: Rhizorhapis suberifaciens JCM 8522
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 165803

Type strain:

Species: Rhizorhapis suberifaciens

Culture col. no.: JCM 8522, ATCC 49356, LMG 11117, NCPPB 3628

Strain history: ATCC 49356 <-- A. H. C. van Bruggen CR-FL1.

NCBI tax ID(s): 13656 (species)

SI-ID 92416

LMG 11117, ATCC 49356, NCPPB 3628, JCM 8522

Special Collections

Other strains from Rhizorhapis suberifaciens

Section

Rhizorhapis suberifaciens JCM 8522 is a bacterium that was isolated from Soil with lettuce seedlings.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Rhizorhapis*
	Species	**Rhizorhapis suberifaciens**
	Full Scientific Name (LPSN)	Rhizorhapis suberifaciens (van Bruggen et al. 1990) Francis et al. 2014

	Synonym	Sphingobium suberifaciens
	Synonym	Rhizomonas suberifaciens
	Synonym	Sphingomonas suberifaciens

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	26 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil with lettuce seedlings
[Ref.: #67770]	Geographic location (country and/or sea, region)	FL
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC379082 (>99% sequence identity) for Rhizorhapis suberifaciens subclade from Microbeatlas

Aquatic Samples	5886
Soil Samples	12941
Animal Samples	2084
Plant Samples	3457
Total Samples	24368

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rhizorhapis suberifaciens gene for 16S rRNA, partial sequence, strain: JCM 8522	LC379082	1411	GenBank ENA	13656 tax ID

[Ref.: #67770]

GC-content

58.6-59.2 mol%

Buoyant density centrifugation (BD)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 8522, ATCC 49356, LMG 11117, NCPPB 3628

[Ref.: #114626]

SI-ID 92416

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#114626

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92416.1 )

* These data were automatically processed and therefore are not curated

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