Name: Streptomyces marinus Sp080513GE-26
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16473

Type strain:

Species: Streptomyces marinus

Strain Designation: Sp080513GE-26

Culture col. no.: DSM 41968, NBRC 105047

Strain history: <- T. Tamura, NBRC; NBRC 105047 <- S. T. Khan; Sp080513GE-26

NCBI tax ID(s): 582854 (species)

SI-ID 396905

DSM 41968

Special Collections

Section

Streptomyces marinus Sp080513GE-26 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from marine sponge Haliclona sp..

Gram-positive
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces marinus**
	Full Scientific Name (LPSN)	Streptomyces marinus Khan et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29742]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %90.151

[Ref.: #29742]	Cell shape	rod-shaped

[Ref.: #29742]	Motility	no

[Ref.: #29742]

Pigment production

yes

Multimedia content

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Intellectual property rights:

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #16405]	growth	28 °C
[Ref.: #19833]	optimum	28 °C
[Ref.: #29742]	growth	15-37 °C
[Ref.: #29742]	optimum	25-28 °C

	pH	Kind of pH		pH
[Ref.: #29742]			optimum	06-09
[Ref.: #29742]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29742]	Oxygen tolerance	aerobe
[Ref.: #69480]	Oxygen tolerance	aerobe Confidence in %94.892

[Ref.: #29742]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %93.812
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29742]		NaCl		growth	01-10	%
[Ref.: #29742]		NaCl		optimum	02-07	%

[Ref.: #29742]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29742]	arabinose ChEBI	+	carbon source
[Ref.: #29742]	fructose ChEBI	+	carbon source
[Ref.: #29742]	mannitol ChEBI	+	carbon source
[Ref.: #29742]	sucrose ChEBI	+	carbon source
[Ref.: #29742]	xylose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #29742]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #29742]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19833]	648	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16405]	Sample type/isolated from	marine sponge Haliclona sp.
[Ref.: #16405]	Host species	Haliclona
[Ref.: #16405]	Geographic location (country and/or sea, region)	Chiba prefecture, pacific coastline of Tateyama City
[Ref.: #16405]	Country	Japan
[Ref.: #16405]	Country ISO 3 Code	JPN
[Ref.: #16405]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Porifera (Sponges)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16405]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16405]	Streptomyces marinus gene for 16S rRNA, partial sequence	AB473554	1473	GenBank ENA	582854 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces haliclonae strain DSM 41968	582855.3	wgs	PATRIC	582855 tax ID	*
[Ref.: #66792]	Streptomyces marinus DSM 41968	2870579115	draft	JGI IMG/M	582855 tax ID	*

[Ref.: #16405]	GC-content	72 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #29742]	GC-content	72 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces haliclonae strain DSM 41968 PATRIC: 582855.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces haliclonae strain DSM 41968 PATRIC: 582855.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.151	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.749	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	93.812	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	94.892	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.422	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89.5	yes

Availability in culture collections External links

[Ref.: #16405]

Culture collection no.

DSM 41968, NBRC 105047

[Ref.: #85509]

SI-ID 396905

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genome mining and description of Streptomyces albidus sp. nov., an endophytic actinobacterium with antibacterial potential.	Kaewkla O, Franco CMM	Antonie Van Leeuwenhoek	10.1007/s10482-021-01539-1	2021	*
Phylogeny	Streptomyces ovatisporus sp. nov., isolated from deep marine sediment.	Veyisoglu A, Cetin D, Inan Bektas K, Guven K, Sahin N	Int J Syst Evol Microbiol	10.1099/ijsem.0.001442	2016	*
Phylogeny	Streptomyces daqingensis sp. nov., isolated from saline-alkaline soil.	Pan T, He H, Li C, Zhao J, Zhang Y, Li J, Wang X, Liu C, Zhang J, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.000887	2016	*
Phylogeny	Streptomyces calidiresistens sp. nov., isolated from a hot spring sediment.	Duan YY, Ming H, Dong L, Yin YR, Zhang Y, Zhou EM, Liu L, Nie GX, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0180-x	2014	*
Phylogeny	Streptomyces karpasiensis sp. nov., isolated from soil.	Veyisoglu A, Tatar D, Cetin D, Guven K, Sahin N	Int J Syst Evol Microbiol	10.1099/ijs.0.056275-0	2013	*
Phylogeny	Streptomyces panacagri sp. nov., isolated from soil of a ginseng field.	Cui Y, Baek SH, Wang L, Lee HG, Cui C, Lee ST, Im WT	Int J Syst Evol Microbiol	10.1099/ijs.0.029942-0	2011	*
Phylogeny	Streptomyces tateyamensis sp. nov., Streptomyces marinus sp. nov. and Streptomyces haliclonae sp. nov., isolated from the marine sponge Haliclona sp.	Khan ST, Tamura T, Takagi M, Shin-Ya K	Int J Syst Evol Microbiol	10.1099/ijs.0.019869-0	2010	*

References

#16405

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41968

#19833

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29742

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26124 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85509

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396905.1 )

#26124

IJSEM 2775 2010 ( DOI 10.1099/ijs.0.019869-0 , PubMed 20061489 )

* These data were automatically processed and therefore are not curated

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Streptomyces haliclonae strain DSM 41968

Streptomyces haliclonae strain DSM 41968

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