Name: Pseudomonas akappageensis PS24
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164624

Type strain:

Species: Pseudomonas akappageensis

Strain Designation: PS24

Culture col. no.: JCM 33654, CECT 9941, LMG 31497

Strain history: Y. Morimoto; Juntendo Univ., Japan; PS24.

NCBI tax ID(s): 2609961 (species)

Section

Pseudomonas akappageensis PS24 is a psychrophilic, Gram-positive, motile bacterium that forms circular colonies and was isolated from Soil at Mt. Akappage in Izu Oshima.

colony-forming
Gram-positive
motile
rod-shaped
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas akappageensis**
	Full Scientific Name (LPSN)	Pseudomonas akappageensis corrig. Morimoto et al. 2020

Synonym

Pseudomonas akappagea

Information on morphological and physiological properties Morphology

[Ref.: #67902]	Gram stain	positive

[Ref.: #67902]	Cell length	1.25-2.0 µm

[Ref.: #67902]	Cell width	0.5-0.7 µm

[Ref.: #67902]	Cell shape	rod-shaped

[Ref.: #67902]	Motility	yes

[Ref.: #67902]	Colony color	beige
[Ref.: #67902]	Colony shape	circular
[Ref.: #67902]	Incubation period	1 day
[Ref.: #67902]	Cultivation medium used	Trypticase Soy Agar (TSA)

[Ref.: #67902]	Pigment production	no
[Ref.: #67902]	Pigment name	fluorescent pigment

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	22 °C
[Ref.: #67902]	growth	5-36 °C
[Ref.: #67902]	optimum	24-28 °C

[Ref.: #67770]

Temperature range

psychrophilic

	pH	Kind of pH		pH
[Ref.: #67902]			growth	5.0-8.0

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67902]		NaCl		growth	0.0-3.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67902]	(R)-malic acid ChEBI	-	carbon source
[Ref.: #67902]	(S)-lactate ChEBI	+	carbon source
[Ref.: #67902]	(S)-malic acid ChEBI	+	carbon source
[Ref.: #67902]	1 % sodium lactate	+	growth
[Ref.: #67902]	2-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #67902]	2-oxobutanoate ChEBI	-	carbon source
[Ref.: #67902]	2-oxoglutarate ChEBI	+	carbon source
[Ref.: #67902]	3-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #67902]	3-O-methyl-D-glucose ChEBI	-	carbon source
[Ref.: #67902]	4-hydroxyphenylacetic acid ChEBI	-	carbon source
[Ref.: #67902]	acetic acid ChEBI	+	carbon source
[Ref.: #67902]	acetoacetate ChEBI	-	carbon source
[Ref.: #67902]	adipate ChEBI	+	assimilation
[Ref.: #67902]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #67902]	alpha-lactose ChEBI	-	carbon source
[Ref.: #67902]	aztreonam ChEBI	+	growth
[Ref.: #67902]	bromosuccinate ChEBI	+	carbon source
[Ref.: #67902]	cellobiose ChEBI	-	carbon source
[Ref.: #67902]	citrate ChEBI	-	carbon source
[Ref.: #67902]	citrate ChEBI	+	carbon source
[Ref.: #67902]	D-arabitol ChEBI	-	carbon source
[Ref.: #67902]	D-aspartate ChEBI	-	carbon source
[Ref.: #67902]	D-fructose ChEBI	-	carbon source
[Ref.: #67902]	D-fructose 6-phosphate ChEBI	-	carbon source
[Ref.: #67902]	D-fucose ChEBI	-	carbon source
[Ref.: #67902]	D-galactose ChEBI	-	carbon source
[Ref.: #67902]	D-galacturonic acid ChEBI	-	carbon source
[Ref.: #67902]	D-glucarate ChEBI	+	carbon source
[Ref.: #67902]	D-gluconate ChEBI	+	carbon source
[Ref.: #67902]	D-glucose ChEBI	+	assimilation
[Ref.: #67902]	D-glucose 6-phosphate ChEBI	-	carbon source
[Ref.: #67902]	D-glucuronate ChEBI	-	carbon source
[Ref.: #67902]	D-mannitol ChEBI	-	carbon source
[Ref.: #67902]	D-mannose ChEBI	-	carbon source
[Ref.: #67902]	D-serine ChEBI	+	growth
[Ref.: #67902]	D-serine ChEBI	+	carbon source
[Ref.: #67902]	D-sorbitol ChEBI	-	carbon source
[Ref.: #67902]	D-trehalose ChEBI	-	carbon source
[Ref.: #67902]	formate ChEBI	+	carbon source
[Ref.: #67902]	galactarate ChEBI	-	carbon source
[Ref.: #67902]	gamma-aminobutyric acid ChEBI	+	carbon source
[Ref.: #67902]	gelatin ChEBI	-	carbon source
[Ref.: #67902]	gentiobiose ChEBI	-	carbon source
[Ref.: #67902]	glucuronamide ChEBI	-	carbon source
[Ref.: #67902]	glycerol ChEBI	+	carbon source
[Ref.: #67902]	glycine-proline ChEBI	-	carbon source
[Ref.: #67902]	guanidinium chloride ChEBI	+	growth
[Ref.: #67902]	hexanoate ChEBI	+	assimilation
[Ref.: #67902]	inosine ChEBI	-	carbon source
[Ref.: #67902]	L-alanine ChEBI	+	carbon source
[Ref.: #67902]	L-arginine ChEBI	+	carbon source
[Ref.: #67902]	L-aspartate ChEBI	+	carbon source
[Ref.: #67902]	L-fucose ChEBI	-	carbon source
[Ref.: #67902]	L-galactonic acid gamma-lactone ChEBI	-	carbon source
[Ref.: #67902]	L-glutamate ChEBI	+	carbon source
[Ref.: #67902]	L-histidine ChEBI	+	carbon source
[Ref.: #67902]	L-pyroglutamate ChEBI	+	carbon source
[Ref.: #67902]	L-rhamnose ChEBI	-	carbon source
[Ref.: #67902]	L-serine ChEBI	+	carbon source
[Ref.: #67902]	lincomycin ChEBI	+	growth
[Ref.: #67902]	malate ChEBI	+	assimilation
[Ref.: #67902]	maltose ChEBI	-	carbon source
[Ref.: #67902]	melibiose ChEBI	-	carbon source
[Ref.: #67902]	methyl (R)-lactate ChEBI	-	carbon source
[Ref.: #67902]	methyl beta-D-glucopyranoside ChEBI	-	carbon source
[Ref.: #67902]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #67902]	myo-inositol ChEBI	-	carbon source
[Ref.: #67902]	N-acetyl-D-mannosamine ChEBI	-	carbon source
[Ref.: #67902]	N-acetylgalactosamine ChEBI	-	carbon source
[Ref.: #67902]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #67902]	n-acetylneuraminate ChEBI	-	carbon source
[Ref.: #67902]	niaproof ChEBI	+	growth
[Ref.: #67902]	pectin ChEBI	-	carbon source
[Ref.: #67902]	phenylacetate ChEBI	+	assimilation
[Ref.: #67902]	potassium nitrate ChEBI	+	assimilation
[Ref.: #67902]	potassium tellurite ChEBI	+	growth
[Ref.: #67902]	propionate ChEBI	+	carbon source
[Ref.: #67902]	quinate ChEBI	+	carbon source
[Ref.: #67902]	raffinose ChEBI	-	carbon source
[Ref.: #67902]	rifamycin sv ChEBI	+	growth
[Ref.: #67902]	salicin ChEBI	-	carbon source
[Ref.: #67902]	sodium citrate ChEBI	+	assimilation
[Ref.: #67902]	stachyose ChEBI	-	carbon source
[Ref.: #67902]	sucrose ChEBI	-	carbon source
[Ref.: #67902]	tetrazolium blue ChEBI	+	growth
[Ref.: #67902]	tetrazolium violet ChEBI	+	growth
[Ref.: #67902]	troleandomycin ChEBI	+	growth
[Ref.: #67902]	turanose ChEBI	-	carbon source
[Ref.: #67902]	tween 40 ChEBI	-	carbon source
[Ref.: #67902]	vancomycin ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #67902]		catalase	+	1.11.1.6
[Ref.: #67902]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil at Mt. Akappage in Izu Oshima
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tokyo
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #67902]	Sample type/isolated from	ground surface
[Ref.: #67902]	Geographic location (country and/or sea, region)	Izu Oshima, Tokyo
[Ref.: #67902]	Country	Japan
[Ref.: #67902]	Country ISO 3 Code	JPN
[Ref.: #67902]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudomonas sp. strain PS24 16S ribosomal RNA gene, partial sequence	MN382268	1460	ENA	306 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudomonas akapageensis PS24	GCA_011355085	scaffold	GenBank	2609961 tax ID

[Ref.: #67902]	GC-content	60.2 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	59.58 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas akapageensis PS24 NCBI: GCA_011355085.1
[Ref.: #69480]	flagellated	yes	81.908	no
[Ref.: #69480]	gram-positive	no	96.581	yes
[Ref.: #69480]	anaerobic	no	98.358	no
[Ref.: #69480]	aerobic	yes	95.335	no
[Ref.: #69480]	halophile	no	85.316	no
[Ref.: #69480]	spore-forming	no	95.585	no
[Ref.: #69480]	glucose-util	yes	90.469	no
[Ref.: #69480]	thermophile	no	99.74	no
[Ref.: #69480]	motile	yes	90.902	no
[Ref.: #69480]	glucose-ferment	no	89.681	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33654, CECT 9941, LMG 31497

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas atagosis sp. nov., and Pseudomonas akappagea sp. nov., New Soil Bacteria Isolated from Samples on the Volcanic Island Izu Oshima, Tokyo.	Morimoto Y, Uwabe K, Tohya M, Hiramatsu K, Kirikae T, Baba T	Curr Microbiol	10.1007/s00284-020-01943-2	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#67902

Yuh Morimoto, Kazuki Uwabe, Mari Tohya, Keiichi Hiramatsu, Teruo Kirikae, Tadashi Baba: Pseudomonas atagosis sp. nov., and Pseudomonas akappagea sp. nov., New Soil Bacteria Isolated from Samples on the Volcanic Island Izu Oshima, Tokyo. Curr Microbiol 77: 1909 - 1915 2020 ( DOI 10.1007/s00284-020-01943-2 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Pseudomonas akapageensis PS24

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