Pseudomonas atagonensis (LMG 31496, CECT 9940, JCM 33653)

Name: Pseudomonas atagonensis (LMG 31496, CECT 9940, JCM 33653)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164623

Type strain

Strain Designation PS14

Culture col. no. LMG 31496 CECT 9940 JCM 33653 PS14

NCBI tax ID(s) 2609964

Special Collections JCM Literature strains

History JCM <-- Y. Morimoto; Juntendo Univ., Japan; PS14.

Links

Pseudomonas atagonensis PS14 is a Gram-negative, motile, rod-shaped bacterium that was isolated from Soil at Mt. Atago in Izu Oshima.

Gram-negative motile rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 366687

LMG 31496,CECT 9940

@ref 20215

Last LPSN update 2026-05-29 08:45:27

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas atagonensis

Full scientific name Pseudomonas atagonensis corrig. Morimoto et al. 2020

Synonyms (1)

Pseudomonas atagosis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
67902	negative	1.0-1.7 µm	0.4-0.6 µm	rod-shaped
125438	negative				98.5
125438					91.761

Colony morphology

@ref	Colony color	Incubation period	Medium used
67902	creamy-white	1 day	Trypticase Soy Agar (TSA)

Pigmentation

@ref	Production	Name
67902		fluorescent pigment

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	25
67902	positive	growth	5-32
67902	positive	optimum	24-28

Culture pH

@ref	Ability	Type	PH
67902	positive	growth	5-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.741

Halophily

@ref	Salt	Growth	Tested relation	Concentration
67902	NaCl	positive	growth	0-4 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
67902	16651 ChEBI	(S)-lactate	+	carbon source
67902		1 % sodium lactate	+	growth
67902	16763 ChEBI	2-oxobutanoate	-	carbon source
67902	16810 ChEBI	2-oxoglutarate	+	carbon source
67902	37054 ChEBI	3-hydroxybutyrate	+	carbon source
67902	18101 ChEBI	4-hydroxyphenylacetic acid	-	carbon source
67902	16411 ChEBI	acetic acid	+	carbon source
67902	13705 ChEBI	acetoacetate	-	carbon source
67902	17925 ChEBI	alpha-D-glucose	+	carbon source
67902	161680 ChEBI	aztreonam	+	growth
67902	73706 ChEBI	bromosuccinate	-	carbon source
67902	16947 ChEBI	citrate	+	carbon source
67902	18333 ChEBI	D-arabitol	-	carbon source
67902	29990 ChEBI	D-aspartate	-	carbon source
67902	15824 ChEBI	D-fructose	+	carbon source
67902	78697 ChEBI	D-fructose 6-phosphate	-	carbon source
67902	28847 ChEBI	D-fucose	+/-	carbon source
67902	12936 ChEBI	D-galactose	+	carbon source
67902	18024 ChEBI	D-galacturonic acid	-	carbon source
67902	30612 ChEBI	D-glucarate	+	carbon source
67902	8391 ChEBI	D-gluconate	+	carbon source
67902	17634 ChEBI	D-glucose	+	assimilation
67902	15748 ChEBI	D-glucuronate	-	carbon source
67902	15588 ChEBI	D-malate	-	carbon source
67902	16899 ChEBI	D-mannitol	+	assimilation
67902	16024 ChEBI	D-mannose	+/-	assimilation
67902	16523 ChEBI	D-serine	-	carbon source
67902	16523 ChEBI	D-serine	+	growth
67902	27689 ChEBI	decanoate	+	assimilation
67902	71321 ChEBI	fusidate	+	growth
67902	16537 ChEBI	galactarate	+	carbon source
67902	16865 ChEBI	gamma-aminobutyric acid	+	carbon source
67902	5291 ChEBI	gelatin	+	hydrolysis
67902	32323 ChEBI	glucuronamide	+	carbon source
67902	17754 ChEBI	glycerol	+	carbon source
67902	70744 ChEBI	glycyl-L-proline	-	carbon source
67902	32735 ChEBI	guanidinium chloride	+	growth
67902	17596 ChEBI	inosine	+/-	carbon source
67902	16977 ChEBI	L-alanine	+	carbon source
67902	30849 ChEBI	L-arabinose	+	assimilation
67902	16467 ChEBI	L-arginine	+	hydrolysis
67902	16467 ChEBI	L-arginine	+	carbon source
67902	29991 ChEBI	L-aspartate	+	carbon source
67902	17464 ChEBI	L-galactonic acid gamma-lactone	-	carbon source
67902	29988 ChEBI	L-glutamate	+	carbon source
67902	15589 ChEBI	L-malate	+	carbon source
67902	18183 ChEBI	L-pyroglutamic acid	+	carbon source
67902	17115 ChEBI	L-serine	+	carbon source
67902	6472 ChEBI	lincomycin	+	growth
67902	48607 ChEBI	lithium chloride	+	growth
67902	25115 ChEBI	malate	+	assimilation
67902	59640 ChEBI	N-acetylglucosamine	+	assimilation
67902	100147 ChEBI	nalidixic acid	+	growth
67902	75273 ChEBI	niaproof	+	growth
67902	17309 ChEBI	pectin	-	carbon source
67902	18401 ChEBI	phenylacetate	-	assimilation
67902	32032 ChEBI	potassium gluconate	+	assimilation
67902	75248 ChEBI	potassium tellurite	+	growth
67902	17272 ChEBI	propionate	+	carbon source
67902	26490 ChEBI	quinate	+	carbon source
67902	29673 ChEBI	rifamycin sv	+	growth
67902	53258 ChEBI	sodium citrate	+	assimilation
67902	75198 ChEBI	tetrazolium blue	+	growth
67902	75193 ChEBI	tetrazolium violet	+	growth
67902	45735 ChEBI	troleandomycin	+	growth
67902	53423 ChEBI	tween 40	-	carbon source
67902	28001 ChEBI	vancomycin	+	growth

Enzymes

@ref	Value	Activity	Ec
67902	arginine dihydrolase	+	3.5.3.6
67902	catalase	+	1.11.1.6
67902	cytochrome oxidase	+	1.9.3.1
67902	nitrate reductase	-	1.7.99.4
67902	protease	+

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration
67770	Soil at Mt. Atago in Izu Oshima	Tokyo	Japan	JPN	Asia
67902	ground surface	Izu Oshima, 120 km southwest of central Tokyo	Japan	JPN	Asia	Pseudomonas CFC/CN agar	2 days

Taxonmaps

69479

Global distribution of 16S sequence MN396717 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	124
Soil Samples	197
Animal Samples	162
Plant Samples	153
Total Samples	636

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1136948v1 assembly for Pseudomonas atagonensis PS14	scaffold	GCA_011369485	2609964.3	3007680257	2609964	61.78

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Pseudomonas atagonensis strain PS14 16S ribosomal RNA gene, partial sequence	MN396717	1460		306

GC content

@ref	GC-content (mol%)	Method
67902	59.58	genome sequence analysis
67770	60.2	genome sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas atagonensis PS14
NCBI: GCA_011369485.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	yes
125438	anaerobic	anaerobicⓘ	no	97.13	no
125438	aerobic	aerobicⓘ	yes	91.74	no
125438	spore-forming	spore-formingⓘ	no	81.61	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	yes	91.76	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas atagosis sp. nov., and Pseudomonas akappagea sp. nov., New Soil Bacteria Isolated from Samples on the Volcanic Island Izu Oshima, Tokyo.	Morimoto Y, Uwabe K, Tohya M, Hiramatsu K, Kirikae T, Baba T	Curr Microbiol	10.1007/s00284-020-01943-2	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67902	Yuh Morimoto, Kazuki Uwabe, Mari Tohya, Keiichi Hiramatsu, Teruo Kirikae, Tadashi Baba: Pseudomonas atagosis sp. nov., and Pseudomonas akappagea sp. nov., New Soil Bacteria Isolated from Samples on the Volcanic Island Izu Oshima, Tokyo. Curr Microbiol 77: 1909 - 1915 2020 ( DOI 10.1007/s00284-020-01943-2 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas atagonensis (LMG 31496, CECT 9940, JCM 33653)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_011369485

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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