Limnobaculum zhutongyuii (GDMCC 1.1586, CGMCC 1.16483, JCM 33489)

Name: Limnobaculum zhutongyuii (GDMCC 1.1586, CGMCC 1.16483, JCM 33489)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164583

Type strain

Culture col. no. GDMCC 1.1586 CGMCC 1.16483 JCM 33489

NCBI tax ID(s) 2498113

Special Collections JCM

History JCM <-- J. Yang; Natl. Inst. for Commun. Dis. Control & Prev., China CDC, China; CF-458.

Links

Limnobaculum zhutongyuii JCM 33489 is a bacterium that was isolated from Cloacal contents of snow finches .

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27982

JCM 33489

@ref 20215

Last LPSN update 2026-05-29 08:45:27

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Limnobaculum

Species Limnobaculum zhutongyuii

Full scientific name Limnobaculum zhutongyuii (Ge et al. 2021) Li et al. 2023

Synonyms (1)

Jinshanibacter zhutongyuii

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	95.234

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	95.688

Spore formation

@ref	Spore formation	Confidence
125439		99.851

Observation

67770

Observationquinones: Q-8

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species
67770	Cloacal contents of snow finches (Montifringilla taczanowskii)	Montifringilla taczanowskii

Taxonmaps

69479

Global distribution of 16S sequence MK312470 (>99% sequence identity) for Jinshanibacter zhutongyuii subclade from Microbeatlas

Aquatic Samples	215
Soil Samples	135
Animal Samples	1293
Plant Samples	82
Total Samples	1725

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM429564v1 assembly for Limnobaculum zhutongyuii CF-458	complete	GCA_004295645	2498113.3	2836850911	2498113	91.75

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Limnobaculum zhutongyuii strain CF-458 16S ribosomal RNA gene, partial sequence	MK312470	1504		2498113

GC content

@ref	GC-content (mol%)	Method
67770	45.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM429564v1 assembly for Limnobaculum zhutongyuii CF-458
NCBI: GCA_004295645

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.69	no
125439	gram_stain	BacteriaNetⓘ	negative	95.23	no
125439	motility	BacteriaNetⓘ	yes	70.89	no
125439	spore_formation	BacteriaNetⓘ	no	99.85	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Jinshanibacter, a new genus of Budviciaceae: identification of Jinshanibacter zhutongyuii sp. nov. and Jinshanibacter xujianqingii sp. nov. isolated from cloacal content of snow finch (Montifringilla taczanowskii).	Ge Y, Wang B, Yang J, Lai XH, Zhang G, Lu S, Jin D, Huang Y, Cheng Y, Zhang X, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004653	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Limnobaculum zhutongyuii (GDMCC 1.1586, CGMCC 1.16483, JCM 33489)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_004295645

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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