Name: Paenibacillus thalictri N2SHLJ1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164504

Type strain:

Species: Paenibacillus thalictri

Strain Designation: N2SHLJ1

Culture col. no.: JCM 33293, CGMCC 1.13865

Strain history: L. Tuo; Zunyi Med. Univ., China; N2SHLJ1.

NCBI tax ID(s): 2527873 (species)

Special Collections

Section

Paenibacillus thalictri N2SHLJ1 is an aerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from Tissue of Thalictrum simplex L..

colony-forming
Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus thalictri**
	Full Scientific Name (LPSN)	Paenibacillus thalictri Tuo and Yan 2019

Information on morphological and physiological properties Morphology

[Ref.: #68045]	Gram stain	positive

[Ref.: #68045]	Cell length	1.4-5-8 µm

[Ref.: #68045]	Cell width	0.5-1.2 µm

[Ref.: #68045]	Cell shape	rod-shaped

[Ref.: #68045]	Colony color	yellowish white
[Ref.: #68045]	Colony shape	circular
[Ref.: #68045]	Incubation period	7 days
[Ref.: #68045]	Cultivation medium used	Trypticase Soy Agar (TSA)

[Ref.: #68045]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	28 °C
[Ref.: #68045]	growth	10-37 °C
[Ref.: #68045]	optimum	30 °C

	pH	Kind of pH		pH
[Ref.: #68045]			optimum	7
[Ref.: #68045]			growth	5.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68045]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68045]		NaCl		growth	0.0-2.0	%(w/v)

[Ref.: #67770]	Observation	quinones: MK-7
[Ref.: #68045]	Observation	The diagnostic diamino acid in the cell-wall peptidoglycan is meso-diaminopimelic acid
[Ref.: #68045]	Observation	the predominant menaquinone is MK-7
[Ref.: #68045]	Observation	The major lipids are diphosphatidylglycerol, phosphatidylglycerol, phosphatidylmonomethylethanolamine, phosphatidylethanolamine, an unidentified aminophospholipid, an unidentified phospholipid, an unidentified aminolipid, an unidentified glycolipid and two unidentified lipids

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68045]	adipate ChEBI	-	assimilation
[Ref.: #68045]	amygdalin ChEBI	+	builds acid from
[Ref.: #68045]	arbutin ChEBI	+	builds acid from
[Ref.: #68045]	casein	-	hydrolysis
[Ref.: #68045]	cellobiose ChEBI	+	builds acid from
[Ref.: #68045]	D-arabinose ChEBI	-	builds acid from
[Ref.: #68045]	D-arabitol ChEBI	+	builds acid from
[Ref.: #68045]	D-fructose ChEBI	+	builds acid from
[Ref.: #68045]	D-fucose ChEBI	-	builds acid from
[Ref.: #68045]	D-galactose ChEBI	+	builds acid from
[Ref.: #68045]	D-glucose ChEBI	+	builds acid from
[Ref.: #68045]	D-glucose ChEBI	+	assimilation
[Ref.: #68045]	D-lyxose ChEBI	+	builds acid from
[Ref.: #68045]	D-mannitol ChEBI	-	builds acid from
[Ref.: #68045]	D-mannitol ChEBI	-	assimilation
[Ref.: #68045]	D-mannose ChEBI	+	builds acid from
[Ref.: #68045]	D-mannose ChEBI	+	assimilation
[Ref.: #68045]	D-ribose ChEBI	+	builds acid from
[Ref.: #68045]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #68045]	D-tagatose ChEBI	-	builds acid from
[Ref.: #68045]	D-xylose ChEBI	+	builds acid from
[Ref.: #68045]	decanoate ChEBI	-	assimilation
[Ref.: #68045]	erythritol ChEBI	-	builds acid from
[Ref.: #68045]	esculin ferric citrate	+	builds acid from
[Ref.: #68045]	galactitol ChEBI	-	builds acid from
[Ref.: #68045]	gelatin ChEBI	-	hydrolysis
[Ref.: #68045]	gentiobiose ChEBI	+/-	builds acid from
[Ref.: #68045]	glycerol ChEBI	+	builds acid from
[Ref.: #68045]	glycogen ChEBI	-	builds acid from
[Ref.: #68045]	inulin ChEBI	-	builds acid from
[Ref.: #68045]	L-arabinose ChEBI	+	builds acid from
[Ref.: #68045]	L-arabinose ChEBI	+	assimilation
[Ref.: #68045]	L-arabitol ChEBI	+/-	builds acid from
[Ref.: #68045]	L-fucose ChEBI	+	builds acid from
[Ref.: #68045]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #68045]	L-sorbose ChEBI	-	builds acid from
[Ref.: #68045]	L-xylose ChEBI	-	builds acid from
[Ref.: #68045]	lactose ChEBI	+	builds acid from
[Ref.: #68045]	malate ChEBI	-	assimilation
[Ref.: #68045]	maltose ChEBI	+	builds acid from
[Ref.: #68045]	maltose ChEBI	+	assimilation
[Ref.: #68045]	melezitose ChEBI	-	builds acid from
[Ref.: #68045]	melibiose ChEBI	+	builds acid from
[Ref.: #68045]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #68045]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #68045]	methyl beta-D-xylopyranoside ChEBI	+	builds acid from
[Ref.: #68045]	myo-inositol ChEBI	+	builds acid from
[Ref.: #68045]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #68045]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #68045]	phenylacetate ChEBI	-	assimilation
[Ref.: #68045]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #68045]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #68045]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #68045]	potassium gluconate ChEBI	+	assimilation
[Ref.: #68045]	raffinose ChEBI	+	builds acid from
[Ref.: #68045]	ribitol ChEBI	+	builds acid from
[Ref.: #68045]	salicin ChEBI	+	builds acid from
[Ref.: #68045]	sodium citrate ChEBI	+	assimilation
[Ref.: #68045]	starch ChEBI	-	hydrolysis
[Ref.: #68045]	starch ChEBI	-	builds acid from
[Ref.: #68045]	sucrose ChEBI	+	builds acid from
[Ref.: #68045]	trehalose ChEBI	+	builds acid from
[Ref.: #68045]	turanose ChEBI	+	builds acid from
[Ref.: #68045]	tween 20 ChEBI	+	hydrolysis
[Ref.: #68045]	tween 40 ChEBI	+	hydrolysis
[Ref.: #68045]	tween 80 ChEBI	+	hydrolysis
[Ref.: #68045]	xylitol ChEBI	+/-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68045]		hydrogen sulfide ChEBI	no

	Physiological tests	Metabolite	Methylred-test
[Ref.: #68045]		glucose ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68045]	acid phosphatase	+	3.1.3.2
[Ref.: #68045]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68045]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #68045]	alpha-fucosidase	+	3.2.1.51
[Ref.: #68045]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68045]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68045]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68045]	beta-galactosidase	+	3.2.1.23
[Ref.: #68045]	beta-glucosidase	+	3.2.1.21
[Ref.: #68045]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68045]	cystine arylamidase	-	3.4.11.3
[Ref.: #68045]	esterase (C 4)	+
[Ref.: #68045]	esterase Lipase (C 8)	+/-
[Ref.: #68045]	leucine arylamidase	+	3.4.11.1
[Ref.: #68045]	lipase (C 14)	-
[Ref.: #68045]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #68045]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68045]	trypsin	-	3.4.21.4
[Ref.: #68045]	urease	-	3.5.1.5
[Ref.: #68045]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Tissue of Thalictrum simplex L.
[Ref.: #67770]	Host species	Thalictrum simplex
[Ref.: #67770]	Geographic location (country and/or sea, region)	Guizhou
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #68045]	Sample type/isolated from	tissue of Thalictrum simplex L.
[Ref.: #68045]	Geographic location (country and/or sea, region)	Guizhou
[Ref.: #68045]	Country	China
[Ref.: #68045]	Country ISO 3 Code	CHN
[Ref.: #68045]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68045]	Paenibacillus thalictri 16S ribosomal RNA gene, partial sequence	MK551734	1506	GenBank ENA	2527873 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68045]	Paenibacillus thalictri N2SHLJ1	GCA_004307995	contig	GenBank ENA	2527873 tax ID
[Ref.: #66792]	Paenibacillus thalictri N2SHLJ1	2881057424	draft	JGI IMG/M	2527873 tax ID	*

[Ref.: #67770]

GC-content

50.8 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33293, CGMCC 1.13865

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus thalictri sp. nov., isolated from surface-sterilized tissue of Thalictrum simplex L.	Tuo L, Yan XR	Int J Syst Evol Microbiol	10.1099/ijsem.0.003699	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68045

Li Tuo, Xiao-Rui Yan: Paenibacillus thalictri sp. nov., isolated from surface-sterilized tissue of Thalictrum simplex L.. IJSEM 69: 3878 - 3884 2019 ( DOI 10.1099/ijsem.0.003699 )

* These data were automatically processed and therefore are not curated

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