Name: Biomaibacter acetigenes SK-G1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164467

Type strain:

Species: Biomaibacter acetigenes

Strain Designation: SK-G1

Culture col. no.: JCM 33158, CCAM 530, KCTC 15783

Strain history: L. Cheng and X. Zhang; Biogas Inst. of Min. of Agric., China; SK-G1.

NCBI tax ID(s): 2316383 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Biomaibacter acetigenes SK-G1 is an anaerobe, chemoorganotroph, thermophilic bacterium that was isolated from Oil sludge of Shengli oilfield in China.

Gram-negative
motile
rod-shaped
anaerobe
chemoorganotroph
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Thermosediminibacterales*
	Family	*Tepidanaerobacteraceae*
	Genus	*Biomaibacter*
	Species	**Biomaibacter acetigenes**
	Full Scientific Name (LPSN)	Biomaibacter acetigenes Zhang et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #68047]	Gram stain	negative

[Ref.: #68047]	Cell length	1.5-3.0 µm

[Ref.: #68047]	Cell width	0.3-0.5 µm

[Ref.: #68047]	Cell shape	rod-shaped
[Ref.: #68047]	Cell shape	curved-shaped

[Ref.: #68047]	Motility	yes

[Ref.: #68047]	Flagellum arrangement	polar

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	55 °C
[Ref.: #68047]	growth	35-65 °C
[Ref.: #68047]	optimum	55 °C

	pH	Kind of pH		pH
[Ref.: #68047]			optimum	6.5-8.0
[Ref.: #68047]			growth	6.0-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68047]

Oxygen tolerance

anaerobe

[Ref.: #68047]

Nutrition type

chemoorganotroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68047]		NaCl		growth	0.0-30.0	g/L
[Ref.: #68047]		NaCl		optimum	0	g/L

[Ref.: #68047]	Observation	major cellular polar lipids are PG and PE
[Ref.: #68047]	Observation	No respiratory quinones are found
[Ref.: #68047]	Observation	Acetate and H2/CO2 are the primary fermentation products of glucose degradation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68047]	arabinose ChEBI	+	assimilation
[Ref.: #68047]	crotonate ChEBI	-	growth
[Ref.: #68047]	disodium fumarate ChEBI	+	assimilation
[Ref.: #68047]	ferric citrate ChEBI	+	electron acceptor
[Ref.: #68047]	fructose ChEBI	+	assimilation
[Ref.: #68047]	galactose ChEBI	+	assimilation
[Ref.: #68047]	glucose ChEBI	+	assimilation
[Ref.: #68047]	glucose ChEBI	+	degradation
[Ref.: #68047]	glucose ChEBI	+	fermentation
[Ref.: #68047]	lactate ChEBI	+	assimilation
[Ref.: #68047]	malate ChEBI	+	assimilation
[Ref.: #68047]	mannose ChEBI	+	assimilation
[Ref.: #68047]	nitrate ChEBI	-	electron acceptor
[Ref.: #68047]	pyruvate ChEBI	+	assimilation
[Ref.: #68047]	raffinose ChEBI	+	assimilation
[Ref.: #68047]	ribose ChEBI	+	assimilation
[Ref.: #68047]	ribose ChEBI	-	growth
[Ref.: #68047]	sulfate ChEBI	-	electron acceptor
[Ref.: #68047]	sulfite ChEBI	-	electron acceptor
[Ref.: #68047]	thiosulfate ChEBI	+	electron acceptor
[Ref.: #68047]	tryptone	+	assimilation
[Ref.: #68047]	xylose ChEBI	+	assimilation
[Ref.: #68047]	yeast extract	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Oil sludge of Shengli oilfield in China

[Ref.: #68047]	Sample type/isolated from	oily sludge
[Ref.: #68047]	Geographic location (country and/or sea, region)	Shengli oilfield
[Ref.: #68047]	Country	China
[Ref.: #68047]	Country ISO 3 Code	CHN
[Ref.: #68047]	Continent	Asia
[Ref.: #68047]	Geographic location	37.9000°/118.5500°
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MH790418 (>99% sequence identity) for Biomaibacter acetigenes subclade from Microbeatlas

Aquatic Samples	187
Soil Samples	15
Animal Samples	25
Plant Samples	3
Total Samples	230

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Biomaibacter acetigenes strain SK-G1 16S ribosomal RNA gene, partial sequence	MH790418	1466	GenBank ENA	2316383 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Biomaibacter acetigenes SK-G1	GCA_003691585	chromosome	GenBank ENA	2316383 tax ID	*

[Ref.: #67770]

GC-content

43.9 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Biomaibacter acetigenes SK-G1 NCBI: GCA_003691585.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	58.071	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	yes	86.272	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	90.909	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	59.121	no
[Ref.: #125438]	thermophile	thermophilicⓘ	yes	65.363	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	74.294	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33158, CCAM 530, KCTC 15783

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Biomaibacter acetigenes gen. nov., sp. nov., and proposal of Thermosediminibacterales ord. nov. containing two novel families of Tepidanaerobacteraceae fam. nov. and Thermosediminibacteraceae fam. nov.	Zhang X, Tu B, Lv XM, Lawson PA, Yang M, Dai LR, Zhang H, Tang YQ, Deng Y, Cheng L	Int J Syst Evol Microbiol	10.1099/ijsem.0.003701	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68047

Xue Zhang, Bo Tu1, Xiao-meng Lv, Paul A. Lawson, Min Yang, Li-rong Dai, Hui Zhang, Yue-Qin Tang, Yu Deng, Lei Cheng: Description of Biomaibacter acetigenes gen. nov., sp. nov., and proposal of Thermosediminibacterales ord. nov. containing two novel families of Tepidanaerobacteraceae fam. nov. and Thermosediminibacteraceae fam. nov.. IJSEM 69: 3891 - 3902 2019 ( DOI 10.1099/ijsem.0.003701 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

* These data were automatically processed and therefore are not curated

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