Name: Bacillus xiapuensis FJAT-46582
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164466

Type strain:

Species: Bacillus xiapuensis

Strain Designation: FJAT-46582

Culture col. no.: JCM 33155, CCTCC AB 2017047

Strain history: G.-H. Liu; Fujian Acad. of Agric. Sci., China; FJAT-46582.

NCBI tax ID(s): 2014075 (species)

Special Collections

Section

Bacillus xiapuensis FJAT-46582 is an aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from Sediment of the coastal area.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Bacillus*
	Species	**Bacillus xiapuensis**
	Full Scientific Name (LPSN)	Bacillus xiapuensis Liu et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67933]	Gram stain	positive

[Ref.: #67933]	Cell length	1.6-2.8 µm

[Ref.: #67933]	Cell width	0.5-0.7 µm

[Ref.: #67933]	Cell shape	rod-shaped

[Ref.: #67933]	Motility	yes

[Ref.: #67933]	Colony size	1.35-1.65 mm
[Ref.: #67933]	Colony color	cream white
[Ref.: #67933]	Colony shape	circular
[Ref.: #67933]	Incubation period	2 days
[Ref.: #67933]	Cultivation medium used	2216E

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	28 °C
[Ref.: #67933]	growth	10-30 °C
[Ref.: #67933]	optimum	25 °C

	pH	Kind of pH		pH
[Ref.: #67933]			optimum	8
[Ref.: #67933]			growth	6.0-11.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67933]

Oxygen tolerance

aerobe

[Ref.: #67933]	Spore description	terminal, ellipsoidal spores
[Ref.: #67933]	Type of spore	endospore
[Ref.: #67933]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %91.882
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67933]		NaCl		growth	0.0-7.0	%
[Ref.: #67933]		NaCl		optimum	0	%

[Ref.: #67770]	Observation	quinones: MK-7
[Ref.: #67933]	Observation	The cell-wall peptidoglycan contains meso-diaminopimelic acid
[Ref.: #67933]	Observation	the main isoprenoid quinone is MK-7
[Ref.: #67933]	Observation	The main polar lipids are diphosphatidylglycerol, phosphatidylglycerol and phosphatidyl ethanolamine

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67933]	amygdalin ChEBI	-	builds acid from
[Ref.: #67933]	arbutin ChEBI	-	builds acid from
[Ref.: #67933]	cellobiose ChEBI	-	builds acid from
[Ref.: #67933]	citrate ChEBI	-	assimilation
[Ref.: #67933]	D-arabinose ChEBI	-	builds acid from
[Ref.: #67933]	D-arabitol ChEBI	-	builds acid from
[Ref.: #67933]	D-fructose ChEBI	-	builds acid from
[Ref.: #67933]	D-fucose ChEBI	-	builds acid from
[Ref.: #67933]	D-galactose ChEBI	-	builds acid from
[Ref.: #67933]	D-glucose ChEBI	+	builds acid from
[Ref.: #67933]	D-lyxose ChEBI	-	builds acid from
[Ref.: #67933]	D-mannitol ChEBI	-	builds acid from
[Ref.: #67933]	D-mannose ChEBI	-	builds acid from
[Ref.: #67933]	D-ribose ChEBI	-	builds acid from
[Ref.: #67933]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #67933]	D-tagatose ChEBI	-	builds acid from
[Ref.: #67933]	D-xylose ChEBI	-	builds acid from
[Ref.: #67933]	erythritol ChEBI	-	builds acid from
[Ref.: #67933]	esculin ferric citrate	-	builds acid from
[Ref.: #67933]	galactitol ChEBI	-	builds acid from
[Ref.: #67933]	gelatin ChEBI	-	assimilation
[Ref.: #67933]	gentiobiose ChEBI	-	builds acid from
[Ref.: #67933]	glycerol ChEBI	+	builds acid from
[Ref.: #67933]	glycogen ChEBI	-	builds acid from
[Ref.: #67933]	inulin ChEBI	-	builds acid from
[Ref.: #67933]	L-arabinose ChEBI	-	builds acid from
[Ref.: #67933]	L-arabitol ChEBI	-	builds acid from
[Ref.: #67933]	L-fucose ChEBI	-	builds acid from
[Ref.: #67933]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #67933]	L-sorbose ChEBI	-	builds acid from
[Ref.: #67933]	L-xylose ChEBI	-	builds acid from
[Ref.: #67933]	lactose ChEBI	-	builds acid from
[Ref.: #67933]	maltose ChEBI	+	builds acid from
[Ref.: #67933]	melezitose ChEBI	-	builds acid from
[Ref.: #67933]	melibiose ChEBI	-	builds acid from
[Ref.: #67933]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #67933]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #67933]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #67933]	myo-inositol ChEBI	-	builds acid from
[Ref.: #67933]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #67933]	nitrate ChEBI	+	reduction
[Ref.: #67933]	O-nitrophenyl-beta-D-galactopyranosid	-	assimilation
[Ref.: #67933]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #67933]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #67933]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #67933]	raffinose ChEBI	-	builds acid from
[Ref.: #67933]	ribitol ChEBI	-	builds acid from
[Ref.: #67933]	salicin ChEBI	-	builds acid from
[Ref.: #67933]	starch ChEBI	-	hydrolysis
[Ref.: #67933]	starch ChEBI	-	builds acid from
[Ref.: #67933]	sucrose ChEBI	-	builds acid from
[Ref.: #67933]	trehalose ChEBI	-	builds acid from
[Ref.: #67933]	turanose ChEBI	-	builds acid from
[Ref.: #67933]	tween 20 ChEBI	-	hydrolysis
[Ref.: #67933]	tween 40 ChEBI	-	hydrolysis
[Ref.: #67933]	tween 60 ChEBI	-	hydrolysis
[Ref.: #67933]	tween 80 ChEBI	-	hydrolysis
[Ref.: #67933]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #67933]	amikacin ChEBI	yes	30	µg
[Ref.: #67933]	azithromycin ChEBI				yes	15	µg
[Ref.: #67933]	cefazolin ChEBI	yes	30	µg
[Ref.: #67933]	chloramphenicol ChEBI	yes	30	µg
[Ref.: #67933]	clindamycin ChEBI				yes	2	µg
[Ref.: #67933]	doxycycline ChEBI	yes	30	µg
[Ref.: #67933]	erythromycin ChEBI	yes	15	µg
[Ref.: #67933]	gentamicin ChEBI	yes	120	µg
[Ref.: #67933]	gentamicin ChEBI	yes	10	µg
[Ref.: #67933]	kanamycin ChEBI	yes	30	µg
[Ref.: #67933]	neomycin ChEBI	yes	30	µg
[Ref.: #67933]	oxacillin ChEBI	yes	1	µg
[Ref.: #67933]	penicillin g ChEBI	yes	10	µg
[Ref.: #67933]	polymyxin b ChEBI	yes	300	µg
[Ref.: #67933]	rifampicin ChEBI	yes	5	µg
[Ref.: #67933]	streptomycin ChEBI				yes	300	µg
[Ref.: #67933]	tetracycline ChEBI	yes	30	µg
[Ref.: #67933]	vancomycin ChEBI	yes	30	µg
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Group ID of combined antibiotics	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #67933]		20	ampicillin ChEBI	yes	10	µg
[Ref.: #67933]		20	sulbactam ChEBI	yes	10	µg

	Metabolite production	Metabolite	Production
[Ref.: #67933]		hydrogen sulfide ChEBI	no
[Ref.: #67933]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #67933]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #67933]	acid phosphatase	-	3.1.3.2
[Ref.: #67933]	alkaline phosphatase	+	3.1.3.1
[Ref.: #67933]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #67933]	alpha-fucosidase	-	3.2.1.51
[Ref.: #67933]	alpha-galactosidase	-	3.2.1.22
[Ref.: #67933]	alpha-glucosidase	+	3.2.1.20
[Ref.: #67933]	alpha-mannosidase	-	3.2.1.24
[Ref.: #67933]	arginine dihydrolase	-	3.5.3.6
[Ref.: #67933]	beta-galactosidase	-	3.2.1.23
[Ref.: #67933]	beta-glucosidase	-	3.2.1.21
[Ref.: #67933]	beta-glucuronidase	-	3.2.1.31
[Ref.: #67933]	catalase	+	1.11.1.6
[Ref.: #67933]	cystine arylamidase	-	3.4.11.3
[Ref.: #67933]	cytochrome oxidase	-	1.9.3.1
[Ref.: #67933]	esterase (C 4)	+
[Ref.: #67933]	esterase Lipase (C 8)	+
[Ref.: #67933]	leucine arylamidase	-	3.4.11.1
[Ref.: #67933]	lipase (C 14)	-
[Ref.: #67933]	lysine decarboxylase	-	4.1.1.18
[Ref.: #67933]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #67933]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #67933]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #67933]	trypsin	-	3.4.21.4
[Ref.: #67933]	urease	-	3.5.1.5
[Ref.: #67933]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Sediment of the coastal area
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xiapu County, Fujian Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67933]	Sample type/isolated from	sediment
[Ref.: #67933]	Sampling date	2016-08-20
[Ref.: #67933]	Geographic location (country and/or sea, region)	coastal region in Xiapu County, Fujian Province
[Ref.: #67933]	Country	China
[Ref.: #67933]	Country ISO 3 Code	CHN
[Ref.: #67933]	Continent	Asia
[Ref.: #67933]	Geographic location	26.9167°/120.1170°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bacillus xiapuensis strain FJAT-46582 16S ribosomal RNA gene, partial sequence	KY646144	1396	GenBank ENA	2014075 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67933]	Bacillus xiapuensis FJAT-46582	GCA_002797355	scaffold	GenBank ENA	2014075 tax ID

[Ref.: #67933]

GC-content

44.2 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bacillus xiapuensis FJAT-46582 NCBI: GCA_002797355.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacillus xiapuensis FJAT-46582 NCBI: GCA_002797355.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	78.347	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	88.624	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	75.457	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	91.882	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	84.099	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	84.795	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33155, CCTCC AB 2017047

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus xiapuensis sp. nov., isolated from marine sediment.	Liu GH, Liu B, Liu QY, Wang JP, Che JM, Zhang HF, Lan JL, Sengonca C	Int J Syst Evol Microbiol	10.1099/ijsem.0.003381	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#67933

Guo-Hong Liu, Bo Liu, Qin-Ying Liu, Jie-Ping Wang, Jian-Mei Che, Hai-Feng Zhang, Jiang-Lin Lan, Cetin Sengonca: Bacillus xiapuensis sp. nov., isolated from marine sediment. IJSEM 69: 1714 - 1719 2019 ( DOI 10.1099/ijsem.0.003381 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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