Name: Lysobacter segetis 17J68-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164449

Type strain:

Species: Lysobacter segetis

Strain Designation: 17J68-2

Culture col. no.: JCM 33058, KCTC 62237

Strain history: H.-Y. Jung and M. K. Kim; Kyungpook Natl. Univ., South Korea; 17J68-2.

NCBI tax ID(s): 2492394 (species)

Section

Lysobacter segetis 17J68-2 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from Soil from Jeju Island.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Lysobacter*
	Species	**Lysobacter segetis**
	Full Scientific Name (LPSN)	Lysobacter segetis Ten et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #68055]	Gram stain	negative

[Ref.: #68055]	Cell length	1.7-3.6 µm

[Ref.: #68055]	Cell width	0.4-0.6 µm

[Ref.: #68055]	Cell shape	rod-shaped

[Ref.: #68055]	Motility	yes

[Ref.: #68055]	Flagellum arrangement	gliding

[Ref.: #68055]	Colony size	1.0-2.0 mm
[Ref.: #68055]	Colony color	yellow
[Ref.: #68055]	Colony shape	circular
[Ref.: #68055]	Incubation period	2 days
[Ref.: #68055]	Cultivation medium used	Trypticase Soy Agar (TSA)

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C
[Ref.: #68055]			optimum	30 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #68055]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68055]			growth	7.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68055]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68055]		NaCl		growth	0.0-1.0	%

[Ref.: #67770]	Observation	quinones: Q-8
[Ref.: #68055]	Observation	Phosphatidylglycerol, diphosphatidylglycerol, and phosphatidylethanolamine are major polar lipids. Two unidentified aminophospholipids, four unidentified phospholipids, and five unidentified lipids are present in moderate to minor amounts
[Ref.: #68055]	Observation	The predominant respiratory isoprenoid quinone is ubiquinone Q-8.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68055]	esculin ChEBI	-	hydrolysis
[Ref.: #68055]	gelatin ChEBI	+	hydrolysis
[Ref.: #68055]	glucose ChEBI	-	builds acid from
[Ref.: #68055]	nitrate ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #68055]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68055]	acid phosphatase	+	3.1.3.2
[Ref.: #68055]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68055]	alpha-chymotrypsin	+/-	3.4.21.1
[Ref.: #68055]	alpha-glucosidase	+/-	3.2.1.20
[Ref.: #68055]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68055]	catalase	-	1.11.1.6
[Ref.: #68055]	cystine arylamidase	+	3.4.11.3
[Ref.: #68055]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68055]	esterase (C 4)	+
[Ref.: #68055]	esterase Lipase (C 8)	+
[Ref.: #68055]	leucine arylamidase	+	3.4.11.1
[Ref.: #68055]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #68055]	urease	-	3.5.1.5
[Ref.: #68055]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil from Jeju Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #68055]	Sample type/isolated from	soil
[Ref.: #68055]	Geographic location (country and/or sea, region)	Jeju Island
[Ref.: #68055]	Country	Republic of Korea
[Ref.: #68055]	Country ISO 3 Code	KOR
[Ref.: #68055]	Continent	Asia
[Ref.: #68055]	Geographic location	33.4337°/126.5850°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68055]	Lysobacter sp. 17J68-2 gene for 16S ribosomal RNA, partial sequence	LC434628	1468	ENA	2492394 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lysobacter segetis 17J68-2	GCA_004359965	contig	GenBank	2492394 tax ID

[Ref.: #68055]

GC-content

70.5 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lysobacter segetis 17J68-2 NCBI: GCA_004359965.1
[Ref.: #69480]	motile	yes	63.709	no
[Ref.: #69480]	flagellated	no	86.85	yes
[Ref.: #69480]	gram-positive	no	98.409	no
[Ref.: #69480]	anaerobic	no	98.984	no
[Ref.: #69480]	aerobic	yes	88.137	no
[Ref.: #69480]	halophile	no	94.493	yes
[Ref.: #69480]	spore-forming	no	96.975	no
[Ref.: #69480]	glucose-util	yes	81.219	no
[Ref.: #69480]	thermophile	no	88.756	yes
[Ref.: #69480]	glucose-ferment	no	92.464	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33058, KCTC 62237

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lysobacter segetis sp. nov., Isolated from Soil.	Ten LN, Jeon J, Elderiny NS, Kim MK, Lee SY, Jung HY	Curr Microbiol	10.1007/s00284-019-01801-w	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68055

Leonid N. Ten, Jongguen Jeon, Nabil Salah Elderiny, Myung Kyum Kim, Seung-Yeol Lee, Hee-Young Jung: Lysobacter segetis sp. nov., Isolated from Soil. Arch Microbiol 77: 166 - 172 2020 ( DOI 10.1007/s00284-019-01801-w )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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