Name: Geomonas oryzae JCM 33030
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164441

Type strain:

Species: Geomonas oryzae

Culture col. no.: JCM 33030, MCCC 1K03691

Strain history: Y. Masuda and Z. Xu; Grad. Sch. of Agric. & Life Sci., Univ. of Tokyo, Japan; S43.

NCBI tax ID(s): 2364273 (species)

Special Collections

Section

Geomonas oryzae JCM 33030 is an anaerobe, Gram-negative bacterium that was isolated from Paddy field soil from Nagaoka.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfuromonadales*
	Family	*Geobacteraceae*
	Genus	*Geomonas*
	Species	**Geomonas oryzae**
	Full Scientific Name (LPSN)	Geomonas oryzae Xu et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.959

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Paddy field soil from Nagaoka
[Ref.: #67770]	Geographic location (country and/or sea, region)	Niigata
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Geomonas oryzae strain S43 16S ribosomal RNA gene, partial sequence	MH915553	1424	GenBank ENA	2364273 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Geomonas oryzae S43	GCA_004117875	contig	GenBank ENA	2364273 tax ID

[Ref.: #67770]

GC-content

61.2 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Geomonas oryzae S43 NCBI: GCA_004117875.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.959	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	70.151	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	77.359	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	78.722	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.762	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	69.114	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33030, MCCC 1K03691

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Search for species Geomonas oryzae in external resources:
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Geomonas oryzae S43

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Change proposal