Name: Geomonas oryzae JCM 33030
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164441

Type strain:

Species: Geomonas oryzae

Culture col. no.: JCM 33030, MCCC 1K03691

Strain history: Y. Masuda and Z. Xu; Grad. Sch. of Agric. & Life Sci., Univ. of Tokyo, Japan; S43.

NCBI tax ID(s): 2364273 (species)

Section

Geomonas oryzae JCM 33030 is a mesophilic bacterium that was isolated from Paddy field soil from Nagaoka.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfuromonadales*
	Family	*Geobacteraceae*
	Genus	*Geomonas*
	Species	**Geomonas oryzae**
	Full Scientific Name (LPSN)	Geomonas oryzae Xu et al. 2020

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Paddy field soil from Nagaoka
[Ref.: #67770]	Geographic location (country and/or sea, region)	Niigata
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Geomonas oryzae strain S43 16S ribosomal RNA gene, partial sequence	MH915553	1424	ENA	2364273 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Geomonas oryzae S43	GCA_004117875	contig	GenBank	2364273 tax ID

[Ref.: #67770]

GC-content

61.2 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Geomonas oryzae S43 NCBI: GCA_004117875.1
[Ref.: #69480]	motile	yes	85.972	no
[Ref.: #69480]	flagellated	no	70.145	no
[Ref.: #69480]	gram-positive	no	98.997	no
[Ref.: #69480]	anaerobic	yes	96.391	no
[Ref.: #69480]	aerobic	no	96.298	no
[Ref.: #69480]	halophile	no	93.977	no
[Ref.: #69480]	spore-forming	no	88.399	no
[Ref.: #69480]	thermophile	no	98.714	yes
[Ref.: #69480]	glucose-util	no	52.767	no
[Ref.: #69480]	glucose-ferment	no	84.235	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33030, MCCC 1K03691

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Geomonas oryzae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Geomonas oryzae S43

Change proposal

Change proposal