Flagellimonas algicola (KACC 19790, JCM 32942, AST 0115)

Name: Flagellimonas algicola (KACC 19790, JCM 32942, AST 0115)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164419

Type strain

Culture col. no. KACC 19790 JCM 32942 AST 0115

NCBI tax ID(s) 2583815

Special Collections JCM Literature strains

History JCM <-- C. O. Jeon; Chung-Ang Univ., South Korea; AsT0115.

Links

Flagellimonas algicola JCM 32942 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and has a yellow pigmentation.

Gram-negative rod-shaped colony-forming pigmented aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 28146

JCM 32942

@ref 20215

Last LPSN update 2026-05-29 08:45:24

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flagellimonas

Species Flagellimonas algicola

Full scientific name Flagellimonas algicola Kim et al. 2020

Synonyms (2)

Allomuricauda algicola
Muricauda algicola

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
68058	negative	rod-shaped
125438	negative		99.5
125438			91.5

Colony morphology

@ref	Colony color	Colony shape	Medium used
68058	yellow	circular	Marine agar (MA)

Pigmentation

@ref	Production	Color	Name
68058		yellow	non-diffusible

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	25
68058	positive	growth	15-37
68058	positive	optimum	25

Culture pH

@ref	Ability	Type	PH
68058	positive	optimum	7
68058	positive	growth	6.5-7.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
68058	aerobe
125439	obligate aerobe	93.352

Spore formation

@ref	Spore formation	Confidence
125439		91.442
125438		92.996

Halophily

@ref	Salt	Growth	Tested relation	Concentration
68058	NaCl	positive	growth	0.0-11.0 %(w/v)
68058	NaCl	positive	optimum	2.0-3.0 %(w/v)

Observation

@ref	Observation
67770	quinones: MK-6
68058	MK-6 is detected as the only isoprenoid quinone
68058	Phosphatidylethanolamine, one identified aminolipid, and three unidentified polar lipids are identified

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68058	17128 ChEBI	adipate	-	assimilation
68058		casein	+	hydrolysis
68058	17634 ChEBI	D-glucose	+	assimilation
68058	16899 ChEBI	D-mannitol	+	assimilation
68058	16024 ChEBI	D-mannose	-	assimilation
68058	4853 ChEBI	esculin	+	hydrolysis
68058	5291 ChEBI	gelatin	-	hydrolysis
68058	17234 ChEBI	glucose	-	fermentation
68058	17120 ChEBI	hexanoate	+	assimilation
68058	30849 ChEBI	L-arabinose	-	assimilation
68058	25115 ChEBI	malate	-	assimilation
68058	17306 ChEBI	maltose	-	assimilation
68058	506227 ChEBI	N-acetyl-D-glucosamine	+	assimilation
68058	17632 ChEBI	nitrate	+	reduction
68058	18401 ChEBI	phenylacetate	-	assimilation
68058	32032 ChEBI	potassium gluconate	-	assimilation
68058	53258 ChEBI	sodium citrate	-	assimilation
68058	28017 ChEBI	starch	-	hydrolysis
68058	53424 ChEBI	tween 20	-	hydrolysis
68058	53426 ChEBI	tween 80	-	hydrolysis
68058	18186 ChEBI	tyrosine	+	hydrolysis
68058	16199 ChEBI	urea	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68058	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68058	acid phosphatase	+	3.1.3.2
68058	alkaline phosphatase	+	3.1.3.1
68058	alpha-chymotrypsin	+	3.4.21.1
68058	alpha-fucosidase	-	3.2.1.51
68058	alpha-galactosidase	-	3.2.1.22
68058	alpha-glucosidase	-	3.2.1.20
68058	alpha-mannosidase	-	3.2.1.24
68058	beta-galactosidase	+	3.2.1.23
68058	beta-glucosidase	-	3.2.1.21
68058	beta-glucuronidase	-	3.2.1.31
68058	catalase	-	1.11.1.6
68058	cystine arylamidase	-	3.4.11.3
68058	cytochrome oxidase	+	1.9.3.1
68058	esterase (C 4)	-
68058	esterase Lipase (C 8)	-
68058	leucine arylamidase	+	3.4.11.1
68058	lipase (C 14)	-
68058	N-acetyl-beta-glucosaminidase	-	3.2.1.52
68058	naphthol-AS-BI-phosphohydrolase	+
68058	trypsin	-	3.4.21.4
68058	valine arylamidase	-

Fatty acid profile

Metadata FA analysis

@ref

68058

Fatty acid	Percentage
C15:0 iso	56.5
C15:1 iso G	28.6
C16:0	5.2
C15:0 anteiso	3.2
C13:0 iso	2.2

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Host species
67770	Red marine alga, Asparagopsis taxiformis	Yellow Sea				Asparagopsis taxiformis
68058	red marine alga, Asparagopsis taxiformis	Yellow (West) Sea	Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM593718v1 assembly for Flagellimonas algicola AsT0115	contig	GCA_005937185	2583815.3	2890883255	2583815	76.78

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
68058	Flagellimonas algicola 16S ribosomal RNA gene, partial sequence	MK391377	1462		2583815

GC content

@ref	GC-content (mol%)	Method
68058	41.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM593718v1 assembly for Flagellimonas algicola AsT0115
NCBI: GCA_005937185

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.35	no
125439	motility	BacteriaNetⓘ	no	76.19	no
125439	gram_stain	BacteriaNetⓘ	negative	88.67	no
125439	spore_formation	BacteriaNetⓘ	no	91.44	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Muricauda algicola AsT0115
NCBI: GCA_005937185.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	yes
125438	anaerobic	anaerobicⓘ	no	96.31	yes
125438	aerobic	aerobicⓘ	yes	84.16	yes
125438	spore-forming	spore-formingⓘ	no	93.00	no
125438	thermophilic	thermophileⓘ	no	98.35	yes
125438	flagellated	motile2+ⓘ	no	91.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flagellimonas algicola sp. nov., Isolated from a Marine Red Alga, Asparagopsis taxiformis.	Kim J, Kim KH, Chun BH, Khan SA, Jeon CO.	Curr Microbiol	10.1007/s00284-019-01821-6	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68058	Jungeun Kim, Kyung Hyun Kim, Byung Hee Chun, Shehzad Abid Khan, Che Ok Jeon: Flagellimonas algicola sp. nov., Isolated from a Marine Red Alga, Asparagopsis taxiformis. Arch Microbiol 77: 294 - 299 2020 ( DOI 10.1007/s00284-019-01821-6 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flagellimonas algicola (KACC 19790, JCM 32942, AST 0115)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_005937185

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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