Name: Lysinibacillus yapensis JCM 32871
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164403

Type strain:

Species: Lysinibacillus yapensis

Culture col. no.: JCM 32871, MCCC 1A12698

Strain history: X. Tang; Third Inst. of State Oceanic Admin., China; YLB-03.

NCBI tax ID(s): 2304605 (species)

Section

Lysinibacillus yapensis JCM 32871 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from Deep-sea sediment of the Yap Trench .

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Lysinibacillus*
	Species	**Lysinibacillus yapensis**
	Full Scientific Name (LPSN)	Lysinibacillus yapensis Yu et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %95.588

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %100
[Ref.: #69481]	Ability of spore formation	yes Confidence in %98

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Deep-sea sediment of the Yap Trench (4435 m)
[Ref.: #67770]	Country	Pacific Ocean
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lysinibacillus yapensis 16S ribosomal RNA gene, partial sequence	MG913992	1456	ENA	2304605 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lysinibacillus yapensis YLB-03	GCA_003515775	scaffold	GenBank	2304605 tax ID

[Ref.: #67770]

GC-content

39.6 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lysinibacillus yapensis YLB-03 NCBI: GCA_003515775.1
[Ref.: #69481]	spore-forming	yes	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lysinibacillus yapensis YLB-03 NCBI: GCA_003515775.1
[Ref.: #69480]	motile	yes	91.497	no
[Ref.: #69480]	flagellated	yes	86.666	no
[Ref.: #69480]	gram-positive	yes	86.525	no
[Ref.: #69480]	anaerobic	no	97.896	no
[Ref.: #69480]	aerobic	yes	91.332	no
[Ref.: #69480]	halophile	no	82.505	no
[Ref.: #69480]	spore-forming	yes	94.869	no
[Ref.: #69480]	glucose-util	yes	80.701	no
[Ref.: #69480]	thermophile	no	99.762	no
[Ref.: #69480]	glucose-ferment	no	88.805	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32871, MCCC 1A12698

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation and characterization of a novel piezotolerant bacterium Lysinibacillus yapensis sp. nov., from deep-sea sediment of the Yap Trench, Pacific Ocean.	Yu L, Tang X, Wei S, Qiu Y, Xu X, Xu G, Wang Q, Yang Q	J Microbiol	10.1007/s12275-019-8709-3	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Lysinibacillus yapensis YLB-03

Lysinibacillus yapensis YLB-03

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