Sphingobacterium athyrii (CGMCC 1.13466, JCM 32543)

Name: Sphingobacterium athyrii (CGMCC 1.13466, JCM 32543)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164294

Type strain

Culture col. no. CGMCC 1.13466 JCM 32543

NCBI tax ID(s) 2152717

Special Collections JCM

History Y. Li; Coll. of Life Sci., Capital Normal Univ., China; M46.

Links

Sphingobacterium athyrii JCM 32543 is a mesophilic prokaryote that was isolated from Athyrium wallichianum collected from Gawalong glaciers in Tibet.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 131942

JCM 32543

@ref 20215

Last LPSN update 2026-02-09 11:39:49

Domain Bacteria

Phylum Bacteroidota

Class Sphingobacteriia

Order Sphingobacteriales

Family Sphingobacteriaceae

Genus Sphingobacterium

Species Sphingobacterium athyrii

Full scientific name Sphingobacterium athyrii Cheng et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.4
125438	negative	97.769

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		98.2

Observation

67770

Observationquinones: MK-7

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
67770	Athyrium wallichianum collected from Gawalong glaciers in Tibet	Athyrium wallichianum	China	CHN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM307106v1 assembly for Sphingobacterium athyrii M46	scaffold	GCA_003071065	2152717.3	2849492071	2152717	70.63

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Sphingobacterium athyrii 16S ribosomal RNA gene, partial sequence	MG696220	1494		2152717

GC content

67770

GC-content (mol%)40.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sphingobacterium athyrii M46
NCBI: GCA_003071065

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.20	no
125439	motility	BacteriaNetⓘ	no	52.80	no
125439	gram_stain	BacteriaNetⓘ	negative	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	87.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sphingobacterium athyrii M46
NCBI: GCA_003071065.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.77	no
125438	anaerobic	anaerobicⓘ	no	97.15	no
125438	aerobic	aerobicⓘ	yes	82.29	no
125438	spore-forming	spore-formingⓘ	no	87.48	no
125438	thermophilic	thermophileⓘ	no	97.50	yes
125438	flagellated	motile2+ⓘ	no	89.04	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobacterium athyrii sp. nov., a cellulose- and xylan-degrading bacterium isolated from a decaying fern (Athyrium wallichianum Ching).	Cheng JF, Guo JX, Bian YN, Chen ZL, Li CL, Li XD, Li YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003231	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sphingobacterium athyrii (CGMCC 1.13466, JCM 32543)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003071065

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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