Aurantiacibacter suaedae (KCTC 62380, JCM 32445, GH3-15)

Name: Aurantiacibacter suaedae (KCTC 62380, JCM 32445, GH3-15)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164259

Type strain

Strain Designation GH3-15

Culture col. no. KCTC 62380 JCM 32445 GH3-15

NCBI tax ID(s) 2545755

Special Collections JCM KCTC Literature strains

Links

Aurantiacibacter suaedae GH3-15 is an obligate aerobe, mesophilic, Gram-negative prokaryote that forms circular colonies and was isolated from Rhizosphere mudflat of a halophyte collected at Dongmak seashore on Gangwha Island.

Gram-negative motile rod-shaped colony-forming obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 27501

KCTC 62380,JCM 32445

@ref 20215

Last LPSN update 2025-12-16 10:09:25

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Erythrobacteraceae

Genus Aurantiacibacter

Species Aurantiacibacter suaedae

Full scientific name Aurantiacibacter suaedae (Lee et al. 2019) Lee and Kim 2020

Synonyms (1)

Erythrobacter suaedae

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement	Confidence
68202	negative	1.2-1.6 µm	0.6-0.7 µm	rod-shaped		monotrichous, polar
125439	negative						99.7

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
68202	0.5 mm	light yellow	circular	7 days	Marine agar (MA)

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic
68202	positive	growth	20-40
68202	positive	optimum	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
68202	positive	optimum	6-7
68202	positive	growth	5-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
68202	obligate aerobe
125439	obligate aerobe	97

Spore formation

@ref	Spore formation	Confidence
125439		98.9

Halophily

@ref	Salt	Growth	Tested relation	Concentration
68202	NaCl	positive	growth	1-7 %(w/v)
68202	NaCl	positive	optimum	2 %(w/v)

Observation

67770

Observationquinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68202	17057 ChEBI	cellobiose	-	assimilation
68202	15824 ChEBI	D-fructose	-	assimilation
68202	12936 ChEBI	D-galactose	+	assimilation
68202	17634 ChEBI	D-glucose	+	carbon source
68202	65327 ChEBI	D-xylose	-	assimilation
68202	4853 ChEBI	esculin	+	hydrolysis
68202	5291 ChEBI	gelatin	-	hydrolysis
68202	17234 ChEBI	glucose	-	fermentation
68202	30849 ChEBI	L-arabinose	-	assimilation
68202	25115 ChEBI	malate	-	assimilation
68202	17632 ChEBI	nitrate	-	reduction
68202	16634 ChEBI	raffinose	-	assimilation
68202	15963 ChEBI	ribitol	-	assimilation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68202	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68202	acid phosphatase	+	3.1.3.2
68202	alkaline phosphatase	+	3.1.3.1
68202	alpha-chymotrypsin	+	3.4.21.1
68202	alpha-fucosidase	-	3.2.1.51
68202	alpha-galactosidase	-	3.2.1.22
68202	alpha-glucosidase	-	3.2.1.20
68202	alpha-mannosidase	-	3.2.1.24
68202	arginine dihydrolase	-	3.5.3.6
68202	beta-galactosidase	+	3.2.1.23
68202	beta-glucosidase	+	3.2.1.21
68202	beta-glucuronidase	+	3.2.1.31
68202	catalase	+	1.11.1.6
68202	cystine arylamidase	-	3.4.11.3
68202	cytochrome oxidase	+	1.9.3.1
68202	esterase (C 4)	+
68202	esterase Lipase (C 8)	+
68202	leucine arylamidase	+	3.4.11.1
68202	lipase (C 14)	-
68202	N-acetyl-beta-glucosaminidase	-	3.2.1.52
68202	naphthol-AS-BI-phosphohydrolase	+
68202	trypsin	-	3.4.21.4
68202	urease	-	3.5.1.5
68202	valine arylamidase	-

Fatty acid profile

Metadata FA analysis

@ref

68202

Fatty acid	Percentage
C17:1 w6c	28
C18:1 w7c	25.1
C15:0 2OH	11
C18:1 w7c 11-methyl	10.4
C17:0	7.2
C16:0	5.4
C17:1 w8c	2.6
C16:1 w7c/C16:1 w6c	1.8
C14:0 2OH	1.7
C19:1 w7c / C19:1 w6c	1.1
C16:0 2OH	1
C17:1 iso w5c	0.9
C18:3 w6,9,12c	0.7
C18:1 w5c	0.6
C10:0 iso	0.5
C18:0	0.5
C14:0	0.4
iso-C17:0 3OH	0.3
iso-C20:0	0.2
C16:1 w5c	0.2

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Host species
67770	Rhizosphere mudflat of a halophyte (Suaeda japonica) collected at Dongmak seashore on Gangwha Island		Republic of Korea	KOR	Asia						Suaeda japonica
68202	rhizosphere mudflat of a halophyte (Suaeda japonica)	Dongmak seashore on Gangwha Island	Republic of Korea	KOR	Asia	37.5925	126.458 37.5925/126.458	marine agar 2216	10-14 days	30

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM543491v1 assembly for Aurantiacibacter suaedae GH3-15	scaffold	GCA_005434915	2545755.3	2896184354	2545755	71.59

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Aurantiacibacter suaedae 16S ribosomal RNA gene, partial sequence	MG905438	1378		2545755

GC content

@ref	GC-content (mol%)	Method
67770	63.3	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aurantiacibacter suaedae GH3-15
NCBI: GCA_005434915

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.90	no
125439	motility	BacteriaNetⓘ	yes	65.30	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Erythrobacter suaedae sp. nov., isolated from a rhizosphere mudflat of a halophyte (Suaeda japonica).	Lee SD, Kim YJ, Kim IS	Int J Syst Evol Microbiol	10.1099/ijsem.0.003625	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68202	Soon Dong Lee, Young-Ju Kim and In Seop Kim: Erythrobacter suaedae sp. nov., isolated from a rhizosphere mudflat of a halophyte (Suaeda japonica). IJSEM 69: 3287 - 3292 2019 ( DOI 10.1099/ijsem.0.003625 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Aurantiacibacter suaedae (KCTC 62380, JCM 32445, GH3-15)

Name and taxonomic classification