Name: Aurantiacibacter rhizosphaerae JCM 32444
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164258

Type strain:

Species: Aurantiacibacter rhizosphaerae

Culture col. no.: JCM 32444, KCTC 62379

Strain history: S. D. Lee; Jeju Natl. Univ., South Korea; GH3-10.

NCBI tax ID(s): 2691582 (species)

Section

Aurantiacibacter rhizosphaerae JCM 32444 is a mesophilic bacterium that was isolated from Rhizosphere mudflat of a halophyte at Dongmak seashore of Gangwha Island.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Aurantiacibacter*
	Species	**Aurantiacibacter rhizosphaerae**
	Full Scientific Name (LPSN)	Aurantiacibacter rhizosphaerae Lee and Kim 2020

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Rhizosphere mudflat of a halophyte (Suaeda japonica) at Dongmak seashore of Gangwha Island
[Ref.: #67770]	Host species	Suaeda japonica
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MG905437 (>99% sequence identity) for Aurantiacibacter from Microbeatlas

Aquatic Samples	93
Soil Samples	2
Animal Samples
Plant Samples
Total Samples	95

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Erythrobacter sp. strain GH3-10 16S ribosomal RNA gene, partial sequence	MG905437	1387	ENA	2691582 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aurantiacibacter rhizosphaerae GH3-10	GCA_009807005	contig	GenBank	2691582 tax ID

[Ref.: #67770]

GC-content

61.6 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aurantiacibacter rhizosphaerae GH3-10 NCBI: GCA_009807005.1
[Ref.: #69480]	motile	no	92.156	no
[Ref.: #69480]	flagellated	no	98.304	no
[Ref.: #69480]	gram-positive	no	97.449	no
[Ref.: #69480]	anaerobic	no	98.964	no
[Ref.: #69480]	aerobic	yes	95.702	no
[Ref.: #69480]	halophile	no	81.09	no
[Ref.: #69480]	spore-forming	no	95.26	no
[Ref.: #69480]	glucose-util	yes	77.005	no
[Ref.: #69480]	thermophile	no	98.823	no
[Ref.: #69480]	glucose-ferment	no	92.227	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32444, KCTC 62379

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aurantiacibacter rhizosphaerae sp. nov., isolated from a rhizosphere mudflat of a halophyte and proposal to reclassify Erythrobacter suaedae Lee et al. 2019. and Erythrobacter flavus Yoon et al. 2003 as Aurantiacibacter suaedae comb. nov. and Qipengyuania flava comb. nov., respectively.	Lee SD, Kim IS	Int J Syst Evol Microbiol	10.1099/ijsem.0.004524	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Aurantiacibacter rhizosphaerae GH3-10

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