Pseudothauera nasutitermitis (BCRC 81059, JCM 32001, CC-YHH838)

Name: Pseudothauera nasutitermitis (BCRC 81059, JCM 32001, CC-YHH838)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164174

Type strain

Strain Designation CC-YHH838

Culture col. no. BCRC 81059 JCM 32001 CC-YHH838

NCBI tax ID(s) 2565930

Special Collections JCM Literature strains

History C.-C. Young; Coll. of Agric. & Nat. Resour., Natl. Chung Hsing Univ., Taiwan; CC-YHH838.

Links

Pseudothauera nasutitermitis CC-YHH838 is a mesophilic, Gram-negative, motile prokaryote that forms circular colonies and was isolated from Termite nest in Taichung City.

Gram-negative motile rod-shaped colony-forming mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 28162

BCRC 81059,JCM 32001

@ref 20215

Last LPSN update 2025-12-16 10:09:24

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Rhodocyclales

Family Zoogloeaceae

Genus Pseudothauera

Species Pseudothauera nasutitermitis

Full scientific name Pseudothauera nasutitermitis (Lin et al. 2020) Huang et al. 2022

Synonyms (1)

Azoarcus nasutitermitis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
68345	negative	2.2-2.6 µm	0.4-0.6 µm	rod-shaped	polar
125439	negative					93.7
125438	negative					98

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
68345	1-2 mm	yellowish	circular	2 days	Nutrient agar (NA)

Pigmentation

@ref	Production	Name
68345		flexirubin type pigments

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic
68345	positive	growth	20-37
68345	positive	optimum	25-30	mesophilic

Culture pH

@ref	Ability	Type	PH
68345	positive	optimum	7
68345	positive	growth	7-8

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		95.1
125438		90.69

Halophily

@ref	Salt	Growth	Tested relation	Concentration
68345	NaCl	positive	growth	0-2 %(w/v)
68345	NaCl	positive	optimum	1 %(w/v)

Observation

67770

Observationquinones: Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68345	37054 ChEBI	3-hydroxybutyrate	+	oxidation
68345	16411 ChEBI	acetic acid	+	oxidation
68345	27518 ChEBI	acetylene	+	reduction
68345	40585 ChEBI	alpha-cyclodextrin	+	oxidation
68345	73706 ChEBI	bromosuccinate	+	oxidation
68345	17057 ChEBI	cellobiose	+	oxidation
68345	16383 ChEBI	cis-aconitate	+	oxidation
68345	16947 ChEBI	citrate	+	oxidation
68345	15570 ChEBI	D-alanine	+	oxidation
68345	15824 ChEBI	D-fructose	+	oxidation
68345	17113 ChEBI	erythritol	+	oxidation
68345	16000 ChEBI	ethanolamine	+	oxidation
68345	16865 ChEBI	gamma-aminobutyric acid	+	oxidation
68345	5291 ChEBI	gelatin	+	hydrolysis
68345	28087 ChEBI	glycogen	+	oxidation
68345	17120 ChEBI	hexanoate	+	assimilation
68345		hydroxy-L-proline	+	oxidation
68345	16977 ChEBI	L-alanine	+	oxidation
68345	29991 ChEBI	L-aspartate	+	oxidation
68345	29985 ChEBI	L-glutamate	+	oxidation
68345	17203 ChEBI	L-proline	+	oxidation
68345	24996 ChEBI	lactate	+	oxidation
68345	25115 ChEBI	malate	+	assimilation
68345	28053 ChEBI	melibiose	+	oxidation
68345	51850 ChEBI	methyl pyruvate	+	oxidation
68345	28037 ChEBI	n-acetyl-D-galactosamine	+	oxidation
68345	17632 ChEBI	nitrate	+	reduction
68345	17272 ChEBI	propionate	+	oxidation
68345	53258 ChEBI	sodium citrate	+	assimilation
68345	30031 ChEBI	succinate	+	oxidation
68345	53423 ChEBI	tween 40	+	oxidation
68345	53426 ChEBI	tween 80	+	oxidation

Enzymes

@ref	Value	Activity	Ec
68345	acid phosphatase	+	3.1.3.2
68345	alkaline phosphatase	+	3.1.3.1
68345	catalase	+	1.11.1.6
68345	cytochrome oxidase	+	1.9.3.1
68345	DNase	-
68345	esterase (C 4)	+
68345	esterase Lipase (C 8)	+
68345	leucine arylamidase	+	3.4.11.1
68345	naphthol-AS-BI-phosphohydrolase	+
68345	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

68345

Fatty acid	Percentage
C16:0	33.6
C16:1 w7c/C16:1 w6c	26.6
C18:1 w7c/C18:1 w6c	11.2
C17:0 cyclo	9.9
C10:0 3OH	6.5
C12:0	3.7
C14:0	1.6
C17:1 iso w10c	1.5
C18:0 anteiso/C18:2 w6,9c	1.2

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
67770	Termite nest in Taichung City		Taiwan, Province of China	TWN	Asia
68345	termite nest	National Chung Hsing University, Taichung City	Taiwan, Province of China	TWN	Asia	nutrient agar	3 days	30

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
68345	ASM480129v1 assembly for Pseudothauera nasutitermitis CC-YHH838	contig	GCA_004801295	2565930.4	2891720358	2565930	74.38

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Pseudothauera nasutitermitis strain CC-YHH838 16S ribosomal RNA gene, partial sequence	KY860537	1474		2565930

GC content

@ref	GC-content (mol%)	Method
68345	67.5	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudothauera nasutitermitis CC-YHH838
NCBI: GCA_004801295

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.10	no
125439	motility	BacteriaNetⓘ	yes	77.50	no
125439	gram_stain	BacteriaNetⓘ	negative	93.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	79.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Azoarcus nasutitermitis CC-YHH838
NCBI: GCA_004801295.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	yes
125438	anaerobic	anaerobicⓘ	no	81.23	no
125438	aerobic	aerobicⓘ	yes	69.23	no
125438	spore-forming	spore-formingⓘ	no	90.69	no
125438	thermophilic	thermophileⓘ	no	94.92	yes
125438	flagellated	motile2+ⓘ	yes	87.13	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Azoarcus nasutitermitis sp. nov. and Azoarcus rhizosphaerae sp. nov., two nitrogen-fixing species isolated from termite nest and rhizosphere of Ficus religiosa.	Lin SY, Hameed A, Tsai CF, Huang GH, Hsu YH, Young CC	Antonie Van Leeuwenhoek	10.1007/s10482-020-01401-w	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68345	Shih-Yao Lin, Asif Hameed, Chia-Fang Tsai, Guan-Hua Huang, Yi-Han Hsu & Chiu-Chung Young: Description of Azoarcus nasutitermitis sp. nov. and Azoarcus rhizosphaerae sp. nov., two nitrogen-fixing species isolated from termite nest and rhizosphere of Ficus religiosa. Antonie Van Leeuwenhoek 113: 933 - 946 2020 ( DOI 10.1007/s10482-020-01401-w )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudothauera nasutitermitis (BCRC 81059, JCM 32001, CC-YHH838)

Name and taxonomic classification