Name: Pseudothauera rhizosphaerae CC-YHH848
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164175

Type strain:

Species: Pseudothauera rhizosphaerae

Strain Designation: CC-YHH848

Culture col. no.: JCM 32002, BCRC 81060

Strain history: C.-C. Young; Coll. of Agric. & Nat. Resour., Natl. Chung Hsing Univ., Taiwan; CC-YHH848.

NCBI tax ID(s): 2565932 (species)

Section

Pseudothauera rhizosphaerae CC-YHH848 is a mesophilic, Gram-negative, motile bacterium that forms circular colonies and was isolated from Rhizosphere of Ficus religiosa in Taichung City.

colony-forming
Gram-negative
motile
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Rhodocyclales*
	Family	*Zoogloeaceae*
	Genus	*Pseudothauera*
	Species	**Pseudothauera rhizosphaerae**
	Full Scientific Name (PNU)	Pseudothauera rhizosphaerae (Lin et al. 2020) Huang et al. 2022

Synonym

Azoarcus rhizosphaerae

Information on morphological and physiological properties Morphology

[Ref.: #68345]	Gram stain	negative
[Ref.: #68345]	Cell length	2.6-3.2 µm
[Ref.: #68345]	Cell width	0.5-0.7 µm
[Ref.: #68345]	Cell shape	rod-shaped
[Ref.: #68345]	Motility	yes
[Ref.: #68345]	Flagellum arrangement	polar

[Ref.: #68345]	Colony size	1-2 mm
[Ref.: #68345]	Colony color	yellowish
[Ref.: #68345]	Colony shape	circular
[Ref.: #68345]	Incubation period	2 days
[Ref.: #68345]	Cultivation medium used	Nutrient agar (NA)

[Ref.: #68345]	Pigment production	no
[Ref.: #68345]	Pigment name	Flexirubin type pigments

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	30 °C
[Ref.: #68345]	growth	20-37 °C
[Ref.: #68345]	optimum	30 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #68345]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68345]			optimum	8
[Ref.: #68345]			growth	7-8

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68345]		NaCl		growth	0-1	%(w/v)

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68345]	2-hydroxybutyrate ChEBI	+	oxidation
[Ref.: #68345]	3-hydroxybutyrate ChEBI	+	oxidation
[Ref.: #68345]	4-hydroxyphenylacetic acid ChEBI	+	oxidation
[Ref.: #68345]	acetic acid ChEBI	+	oxidation
[Ref.: #68345]	acetylene ChEBI	+	reduction
[Ref.: #68345]	alpha-cyclodextrin ChEBI	+	oxidation
[Ref.: #68345]	bromosuccinate ChEBI	+	oxidation
[Ref.: #68345]	citrate ChEBI	+	oxidation
[Ref.: #68345]	D-alanine ChEBI	+	oxidation
[Ref.: #68345]	D-malate ChEBI	+	assimilation
[Ref.: #68345]	D-trehalose ChEBI	+	oxidation
[Ref.: #68345]	ethanolamine ChEBI	+	oxidation
[Ref.: #68345]	gamma-aminobutyric acid ChEBI	+	oxidation
[Ref.: #68345]	gelatin ChEBI	-	hydrolysis
[Ref.: #68345]	hydroxy-L-proline	+	oxidation
[Ref.: #68345]	L-alaninamide ChEBI	+	oxidation
[Ref.: #68345]	L-alanine ChEBI	+	oxidation
[Ref.: #68345]	L-aspartate ChEBI	+	oxidation
[Ref.: #68345]	L-glutamate ChEBI	+	oxidation
[Ref.: #68345]	L-proline ChEBI	+	oxidation
[Ref.: #68345]	L-serine ChEBI	+	oxidation
[Ref.: #68345]	lactate ChEBI	+	oxidation
[Ref.: #68345]	maltose ChEBI	+	assimilation
[Ref.: #68345]	methyl pyruvate ChEBI	+	oxidation
[Ref.: #68345]	monomethyl succinate ChEBI	+	oxidation
[Ref.: #68345]	nitrate ChEBI	-	reduction
[Ref.: #68345]	phenylacetate ChEBI	+	assimilation
[Ref.: #68345]	propionate ChEBI	+	oxidation
[Ref.: #68345]	succinamate ChEBI	+	oxidation
[Ref.: #68345]	succinate ChEBI	+	oxidation
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68345]	acid phosphatase	+	3.1.3.2
[Ref.: #68345]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68345]	catalase	+	1.11.1.6
[Ref.: #68345]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68345]	DNase	-
[Ref.: #68345]	esterase (C 4)	+
[Ref.: #68345]	esterase Lipase (C 8)	+
[Ref.: #68345]	leucine arylamidase	+	3.4.11.1
[Ref.: #68345]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68345]	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68345]

Fatty acid	Percentage
C16:0	33.4
C16:1 w7c/C16:1 w6c	17.2
C17:0 cyclo	16.1
C18:1 w7c/C18:1 w6c	8.1
C10:0 3OH	7.5
C12:0	6.9
C18:0 anteiso/C18:2 w6,9c	1.9
C17:1 iso w10c	1.4
C14:0	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Rhizosphere of Ficus religiosa in Taichung City
[Ref.: #67770]	Host species	Ficus religiosa
[Ref.: #67770]	Country	Taiwan
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia

[Ref.: #68345]	Sample type/isolated from	rhizosphere of Ficus religiosa
[Ref.: #68345]	Geographic location (country and/or sea, region)	National Chung Hsing University, Taichung City
[Ref.: #68345]	Country	Taiwan
[Ref.: #68345]	Country ISO 3 Code	TWN
[Ref.: #68345]	Continent	Asia
[Ref.: #68345]	Enrichment culture	nutrient agar
[Ref.: #68345]	Enrichment culture duration	3 days
[Ref.: #68345]	Enrichment culture temperature	30 ̊C
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Azoarcus sp. strain CC-YHH848 16S ribosomal RNA gene, partial sequence	KY860534	1473	ENA	2565932 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Azoarcus rhizosphaerae CC-YHH848	GCA_004801305	contig	GenBank	2565932 tax ID

[Ref.: #68345]

GC-content

68.3 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32002, BCRC 81060

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Azoarcus nasutitermitis sp. nov. and Azoarcus rhizosphaerae sp. nov., two nitrogen-fixing species isolated from termite nest and rhizosphere of Ficus religiosa.	Lin SY, Hameed A, Tsai CF, Huang GH, Hsu YH, Young CC	Antonie Van Leeuwenhoek	10.1007/s10482-020-01401-w	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68345

Shih-Yao Lin, Asif Hameed, Chia-Fang Tsai, Guan-Hua Huang, Yi-Han Hsu & Chiu-Chung Young: Description of Azoarcus nasutitermitis sp. nov. and Azoarcus rhizosphaerae sp. nov., two nitrogen-fixing species isolated from termite nest and rhizosphere of Ficus religiosa. Antonie Van Leeuwenhoek 113: 933 - 946 2020 ( DOI 10.1007/s10482-020-01401-w )

* These data were automatically processed and therefore are not curated

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