Name: Saliniramus fredricksonii JCM 31876
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164143

Type strain:

Species: Saliniramus fredricksonii

Culture col. no.: JCM 31876, DSM 102886

Strain history: J. Cole; Pac. Northwest Natl. Lab., USA; HL-109.

NCBI tax ID(s): 1653334 (species)

Section

Saliniramus fredricksonii JCM 31876 is a mesophilic bacterium that was isolated from Hypersaline unicyanobacterial consortium UCC-O, which was obtained from the photosynthetic mat of Hot Lake.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Salinarimonadaceae*
	Genus	*Saliniramus*
	Species	**Saliniramus fredricksonii**
	Full Scientific Name (LPSN)	Saliniramus fredricksonii Cole et al. 2018

Synonym

Salinivirga fredricksonii

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Hypersaline unicyanobacterial consortium UCC-O, which was obtained from the photosynthetic mat of Hot Lake
[Ref.: #67770]	Geographic location (country and/or sea, region)	WA
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KR560061 (>99% sequence identity) for Hyphomicrobiales from Microbeatlas

Aquatic Samples	1162
Soil Samples	795
Animal Samples	1048
Plant Samples	124
Total Samples	3129

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rhizobiales bacterium HL-109 16S ribosomal RNA gene, partial sequence	KR560061	1404	ENA	1653334 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Saliniramus fredricksonii HL-109	GCA_900094735	contig	GenBank	1653334 tax ID

[Ref.: #67770]

GC-content

64.57 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saliniramus fredricksonii HL-109 NCBI: GCA_900094735.1
[Ref.: #69480]	motile	yes	82.46	no
[Ref.: #69480]	flagellated	no	53.972	no
[Ref.: #69480]	gram-positive	no	98.49	no
[Ref.: #69480]	anaerobic	no	89.47	no
[Ref.: #69480]	aerobic	yes	71.303	no
[Ref.: #69480]	halophile	no	60.727	no
[Ref.: #69480]	spore-forming	no	93.652	no
[Ref.: #69480]	glucose-ferment	no	91.482	no
[Ref.: #69480]	thermophile	no	81.778	no
[Ref.: #69480]	glucose-util	yes	71.342	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 31876, DSM 102886

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corrigendum: Saliniramus fredricksonii gen. nov., sp. nov., a heterotrophic halophile isolated from Hot Lake, Washington, a member of a novel lineage (Salinarimonadaceae fam. nov.) within the order Rhizobiales, and reclassification of the genus Salinarimonas Liu et al. 2010 into Salinarimonadaceae.	Cole JK, Morton BR, Cardamone HC, Lake HRR, Dohnalkova AC, Kim YM, Kyle JE, Maezato Y, Dana KL, Metz TO, Romine MF, Nelson WC, Lindemann SR	Int J Syst Evol Microbiol	10.1099/ijsem.0.002807	2018	*
Phylogeny	Salinivirga fredricksonii gen. nov., sp. nov., a heterotrophic halophile isolated from a photosynthetic mat, a member of a novel lineage (Salinarimonadaceae fam. nov.) within the order Rhizobiales, and reclassification of the genus Salinarimonas Liu et al. 2010 into Salinarimonadaceae.	Cole JK, Morton BR, Cardamone HC, Lake HRR, Dohnalkova AC, Kim YM, Kyle JE, Maezato Y, Dana KL, Metz TO, Romine MF, Nelson WC, Lindemann SR	Int J Syst Evol Microbiol	10.1099/ijsem.0.002715	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Saliniramus fredricksonii HL-109

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