Name: Allorhizobium terrae CC-HIH110
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 163970

Type strain:

Species: Allorhizobium terrae

Strain Designation: CC-HIH110

Culture col. no.: JCM 31228, BCRC 80932

Strain history: C.-C. Young; Coll. of Agric. & Nat. Resour., Natl. Chung Hsing Univ., Taiwan; CC-HIH110.

NCBI tax ID(s): 1848972 (species)

Special Collections

Section

Allorhizobium terrae CC-HIH110 is a Gram-negative, motile, rod-shaped bacterium that forms circular colonies and was isolated from Paddy soil in Taiwan.

colony-forming
Gram-negative
motile
rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Allorhizobium*
	Species	**Allorhizobium terrae**
	Full Scientific Name (LPSN)	Allorhizobium terrae Lin et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69541]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %97.5

[Ref.: #69541]	Cell length	1.8-2.1 µm

[Ref.: #69541]	Cell width	0.7-0-9 µm

[Ref.: #69541]	Cell shape	rod-shaped

[Ref.: #69541]	Motility	yes

[Ref.: #69541]	Flagellum arrangement	polar

[Ref.: #69541]	Colony size	2-3 mm
[Ref.: #69541]	Colony color	cream-white
[Ref.: #69541]	Colony shape	circular
[Ref.: #69541]	Incubation period	2 days
[Ref.: #69541]	Cultivation medium used	YMA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69541]

Culture medium

YMA

[Ref.: #69541]

Culture medium growth

		Temperature
[Ref.: #67770]	growth	30 °C
[Ref.: #69541]	growth	15-37 °C
[Ref.: #69541]	optimum	30 °C

	pH	Kind of pH		pH
[Ref.: #69541]			optimum	7
[Ref.: #69541]			growth	5.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %90.903

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69541]		NaCl		growth	2	%(w/v)
[Ref.: #69541]		NaCl		optimum	1	%

[Ref.: #67770]	Observation	quinones: Q-10
[Ref.: #69541]	Observation	Polar lipids present are DPG,PG, PE, PDE, PME, PC, three ALs, two PLs and an L.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69541]	(R)-lactate ChEBI	+	carbon source
[Ref.: #69541]	(S)-lactate ChEBI	+	carbon source
[Ref.: #69541]	2-oxoglutarate ChEBI	+	carbon source
[Ref.: #69541]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #69541]	beta-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #69541]	bromosuccinate ChEBI	+	carbon source
[Ref.: #69541]	cellobiose ChEBI	+	carbon source
[Ref.: #69541]	cis-aconitate ChEBI	+	carbon source
[Ref.: #69541]	citrate ChEBI	+	carbon source
[Ref.: #69541]	D-arabitol ChEBI	+	carbon source
[Ref.: #69541]	D-fructose 6-phosphate ChEBI	+	carbon source
[Ref.: #69541]	D-galactonic acid lactone ChEBI	+	carbon source
[Ref.: #69541]	D-galactose ChEBI	+	carbon source
[Ref.: #69541]	D-galacturonic acid ChEBI	+	carbon source
[Ref.: #69541]	D-gluconate ChEBI	+	carbon source
[Ref.: #69541]	D-glucose ChEBI	+	assimilation
[Ref.: #69541]	D-glucuronate ChEBI	+	carbon source
[Ref.: #69541]	D-mannitol ChEBI	+	assimilation
[Ref.: #69541]	D-mannitol ChEBI	+	carbon source
[Ref.: #69541]	D-mannose ChEBI	+	assimilation
[Ref.: #69541]	D-mannose ChEBI	+	carbon source
[Ref.: #69541]	D-psicose ChEBI	+	carbon source
[Ref.: #69541]	D-sorbitol ChEBI	+	carbon source
[Ref.: #69541]	erythritol ChEBI	+	carbon source
[Ref.: #69541]	formate ChEBI	+	carbon source
[Ref.: #69541]	gentiobiose ChEBI	+	carbon source
[Ref.: #69541]	glycerol ChEBI	+	carbon source
[Ref.: #69541]	hydrogen sulfide ChEBI	-	assimilation
[Ref.: #69541]	indole ChEBI	-	assimilation
[Ref.: #69541]	L-alaninamide ChEBI	+	carbon source
[Ref.: #69541]	L-alanylglycine ChEBI	+	carbon source
[Ref.: #69541]	L-arabinose ChEBI	+	assimilation
[Ref.: #69541]	L-arabinose ChEBI	+	carbon source
[Ref.: #69541]	L-fructose ChEBI	+	carbon source
[Ref.: #69541]	L-histidine ChEBI	+	carbon source
[Ref.: #69541]	L-rhamnose ChEBI	+	carbon source
[Ref.: #69541]	lactose ChEBI	+	carbon source
[Ref.: #69541]	lactulose ChEBI	+	carbon source
[Ref.: #69541]	malate ChEBI	+	assimilation
[Ref.: #69541]	malonate ChEBI	+	carbon source
[Ref.: #69541]	maltose ChEBI	+	carbon source
[Ref.: #69541]	melibiose ChEBI	+	carbon source
[Ref.: #69541]	methyl beta-D-glucopyranoside ChEBI	+	carbon source
[Ref.: #69541]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #69541]	monomethyl succinate ChEBI	+	carbon source
[Ref.: #69541]	myo-inositol ChEBI	+	carbon source
[Ref.: #69541]	n-acetyl-D-galactosamine ChEBI	+	carbon source
[Ref.: #69541]	N-acetyl-D-glucosamine ChEBI	+	assimilation
[Ref.: #69541]	N-acetyl-D-glucosamine ChEBI	+	carbon source
[Ref.: #69541]	nitrate ChEBI	+	assimilation
[Ref.: #69541]	propionate ChEBI	+	carbon source
[Ref.: #69541]	quinate ChEBI	+	carbon source
[Ref.: #69541]	raffinose ChEBI	+	carbon source
[Ref.: #69541]	ribitol ChEBI	+	carbon source
[Ref.: #69541]	succinamate ChEBI	+	carbon source
[Ref.: #69541]	succinate ChEBI	+	carbon source
[Ref.: #69541]	sucrose ChEBI	+	carbon source
[Ref.: #69541]	thymidine ChEBI	+	carbon source
[Ref.: #69541]	trehalose ChEBI	+	carbon source
[Ref.: #69541]	turanose ChEBI	+	carbon source
[Ref.: #69541]	uridine ChEBI	+	carbon source
[Ref.: #69541]	urocanic acid ChEBI	+	carbon source
[Ref.: #69541]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #69541]	acid phosphatase	+	3.1.3.2
[Ref.: #69541]	alkaline phosphatase	+	3.1.3.1
[Ref.: #69541]	alpha-galactosidase	+	3.2.1.22
[Ref.: #69541]	alpha-glucosidase	+	3.2.1.20
[Ref.: #69541]	beta-galactosidase	+	3.2.1.23
[Ref.: #69541]	catalase	+	1.11.1.6
[Ref.: #69541]	cytochrome oxidase	+	1.9.3.1
[Ref.: #69541]	esterase (C 4)	+
[Ref.: #69541]	esterase Lipase (C 8)	+
[Ref.: #69541]	leucine arylamidase	+	3.4.11.1
[Ref.: #69541]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #69541]	trypsin	+	3.4.21.4
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #69541]

Fatty acid	Percentage
C18:1 w6c / C18:1 w7c	64.5
C14:0 3OH/C16:1 ISO I	8.9
C16:0 3OH	7.5
C18:1 2OH	5.1
C19:0 cyclo w8c	2.6
C16:1 w6c/C16:1 w7c	2.5
C16:0	1.8
C18:0 3OH	1.7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Paddy soil in Taiwan

[Ref.: #69541]	Sample type/isolated from	paddy soil in Taiwan(Paddy soil was sampled plot located at Taiwan Agricultural Research Institute Council of Agriculture, Taichung, Taiwan).
[Ref.: #69541]	Geographic location (country and/or sea, region)	Taichung
[Ref.: #69541]	Country	Taiwan, Province of China
[Ref.: #69541]	Country ISO 3 Code	TWN
[Ref.: #69541]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Allorhizobium terrae 16S ribosomal RNA gene, partial sequence	KU248159	1468	GenBank ENA	1848972 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Allorhizobium terrae CC-HIH110	GCA_004801395	contig	GenBank ENA	1848972 tax ID
[Ref.: #69541]	genome sequence	SSOA00000000		GenBank ENA	1848972 tax ID

[Ref.: #67770]

GC-content

55 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Allorhizobium terrae CC-HIH110 NCBI: GCA_004801395.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.716	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	81.343	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.903	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.443	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	75.495	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 31228, BCRC 80932

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Allorhizobium terrae sp. nov., isolated from paddy soil, and reclassification of Rhizobium oryziradicis (Zhao et al. 2017) as Allorhizobium oryziradicis comb. nov.	Lin SY, Hameed A, Huang HI, Young CC	Int J Syst Evol Microbiol	10.1099/ijsem.0.003770	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69541

Shih-Yao Lin, Asif Hameed, Hsin-I Huang and Chiu-Chung Young: Allorhizobium terrae sp. nov., isolated from paddy soil, and reclassification of Rhizobium oryziradicis (Zhao et al. 2017) as Allorhizobium oryziradicis comb. nov.. IJSEM 70: 2020 ( DOI 10.1099/ijsem.0.003770 )

* These data were automatically processed and therefore are not curated

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