Name: Stenotrophomonas tumulicola JCM 30962
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 163921

Type strain:

Species: Stenotrophomonas tumulicola

Culture col. no.: JCM 30962

Strain history: J. Sugiyama; TechnoSuruga Lab. Co., Ltd., Japan; T6517-1-2b.

NCBI tax ID(s): 1685415 (species)

Special Collections

Other strains from Stenotrophomonas tumulicola

Section

Stenotrophomonas tumulicola JCM 30962 is a bacterium that was isolated from Black spots from Takamatsuzuka Tumulus in Asuka-mura.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Stenotrophomonas*
	Species	**Stenotrophomonas tumulicola**
	Full Scientific Name (LPSN)	Stenotrophomonas tumulicola Handa et al. 2016

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Black spots from Takamatsuzuka Tumulus in Asuka-mura
[Ref.: #67770]	Geographic location (country and/or sea, region)	Nara Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC066090 (>99% sequence identity) for Stenotrophomonas from Microbeatlas

Aquatic Samples	340
Soil Samples	455
Animal Samples	566
Plant Samples	1192
Total Samples	2553

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Stenotrophomonas tumulicola gene for 16S ribosomal RNA, partial sequence, strain: T6517-1-2b	LC066090	1472	GenBank ENA	1685415 tax ID

[Ref.: #67770]

GC-content

66.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30962

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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