Name: Parasphingorhabdus pacifica JCM 30177
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 163729

Type strain:

Species: Parasphingorhabdus pacifica

Culture col. no.: JCM 30177, KMM 9574, NRIC 0922

Strain history: N. Tanaka; Tokyo Univ. of Agric., Japan; n34.

NCBI tax ID(s): 1501356 (species)

Special Collections

Section

Parasphingorhabdus pacifica JCM 30177 is a bacterium that was isolated from Sand sediment sample collected from Peter the Great Bay.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Parasphingorhabdus*
	Species	**Parasphingorhabdus pacifica**
	Full Scientific Name (LPSN)	Parasphingorhabdus pacifica (Romanenko et al. 2015) Feng et al. 2020

	Synonym	Sphingorhabdus pacifica
	Synonym	Sphingorhabdus pacificus

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Sand sediment sample collected from Peter the Great Bay
[Ref.: #67770]	Geographic location (country and/or sea, region)	Sea of Japan
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB936074 (>99% sequence identity) for Parasphingorhabdus pacifica subclade from Microbeatlas

Aquatic Samples	1187
Soil Samples	65
Animal Samples	50
Plant Samples	2
Total Samples	1304

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sphingorhabdus pacifica gene for 16S ribosomal RNA, partial sequence	AB936074	1462	GenBank ENA	1501356 tax ID

[Ref.: #67770]

GC-content

56.5 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30177, KMM 9574, NRIC 0922

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingorhabdus pacificus sp. nov., isolated from sandy sediments of the Sea of Japan seashore.	Romanenko LA, Tanaka N, Svetashev VI, Mikhailov VV	Arch Microbiol	10.1007/s00203-014-1033-8	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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