Cite this strain

Novosphingobium sp. (JCM 28639)

Name: Novosphingobium sp. (JCM 28639)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 163531

Type strain

Culture col. no. JCM 28639

NCBI tax ID(s) 1818743

Special Collections JCM

Links

JCM 28639 is a mesophilic prokaryote that was isolated from Viscous substances on the stone wall in the adjacent small room.

mesophilic 16S sequence

Name and taxonomic classification

SI-ID 131237

JCM 28639

@ref 20215

Last LPSN update 2025-12-16 10:09:14

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Erythrobacteraceae

Genus Novosphingobium

Full scientific name Novosphingobium Takeuchi et al. 2001

Synonyms (5)

Flavinovosphingobium
Agrinovosphingobium
Paranovosphingobium
Alterinovosphingobium
Pseudonovosphingobium

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Viscous substances on the stone wall in the adjacent small room	Kitora Tumulus, Asuka Village, Nara Pref.	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC133670 (>99% sequence identity) for Novosphingobium barchaimii from Microbeatlas

Aquatic Samples	120
Soil Samples	125
Animal Samples	298
Plant Samples	57
Total Samples	600

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Novosphingobium sp. JCM 28639 gene for 16S ribosomal RNA, partial sequence	LC133670	1449		1818743

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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